Literature DB >> 9964765

Generalized simulated annealing algorithms using Tsallis statistics: Application to conformational optimization of a tetrapeptide.

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Abstract

Year:  1996        PMID： 9964765     DOI： 10.1103/physreve.53.r3055

Source DB:  PubMed          Journal:  Phys Rev E Stat Phys Plasmas Fluids Relat Interdiscip Topics        ISSN： 1063-651X


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  11 in total

1.  Generalized replica exchange method.

Authors:  Jaegil Kim; Thomas Keyes; John E Straub
Journal:  J Chem Phys       Date:  2010-06-14       Impact factor: 3.488

2.  Generalized simulated tempering for exploring strong phase transitions.

Authors:  Jaegil Kim; John E Straub
Journal:  J Chem Phys       Date:  2010-10-21       Impact factor: 3.488

Review 3.  CHARMM: the biomolecular simulation program.

Authors:  B R Brooks; C L Brooks; A D Mackerell; L Nilsson; R J Petrella; B Roux; Y Won; G Archontis; C Bartels; S Boresch; A Caflisch; L Caves; Q Cui; A R Dinner; M Feig; S Fischer; J Gao; M Hodoscek; W Im; K Kuczera; T Lazaridis; J Ma; V Ovchinnikov; E Paci; R W Pastor; C B Post; J Z Pu; M Schaefer; B Tidor; R M Venable; H L Woodcock; X Wu; W Yang; D M York; M Karplus
Journal:  J Comput Chem       Date:  2009-07-30       Impact factor: 3.376

4.  Optimal replica exchange method combined with Tsallis weight sampling.

Authors:  Jaegil Kim; John E Straub
Journal:  J Chem Phys       Date:  2009-04-14       Impact factor: 3.488

5.  Simulated Q-annealing: conformational search with an effective potential.

Authors:  Won-joon Son; Soonmin Jang; Seokmin Shin
Journal:  J Mol Model       Date:  2011-04-27       Impact factor: 1.810

6.  Multi-level free energy simulation with a staged transformation approach.

Authors:  Shingo Ito; Qiang Cui
Journal:  J Chem Phys       Date:  2020-07-28       Impact factor: 3.488

7.  Energy landscape of a peptide consisting of alpha-helix, 3(10)-helix, beta-turn, beta-hairpin, and other disordered conformations.

Authors:  J Higo; N Ito; M Kuroda; S Ono; N Nakajima; H Nakamura
Journal:  Protein Sci       Date:  2001-06       Impact factor: 6.725

8.  Myosin dynamics on the millisecond time scale.

Authors:  Thomas P Burghardt; Jimmy Yan Hu; Katalin Ajtai
Journal:  Biophys Chem       Date:  2007-09-11       Impact factor: 2.352

9.  Biomolecular QM/MM Simulations: What Are Some of the "Burning Issues"?

Authors:  Qiang Cui; Tanmoy Pal; Luke Xie
Journal:  J Phys Chem B       Date:  2021-01-06       Impact factor: 2.991

10.  First-step mutations for adaptation at elevated temperature increase capsid stability in a virus.

Authors:  Kuo Hao Lee; Craig R Miller; Anna C Nagel; Holly A Wichman; Paul Joyce; F Marty Ytreberg
Journal:  PLoS One       Date:  2011-09-29       Impact factor: 3.240
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