Literature DB >> 9929341

Automatic extraction of PIOPED interpretations from ventilation/perfusion lung scan reports.

M Fiszman1, P J Haug, P R Frederick.   

Abstract

Free-text documents are the main type of data produced by a radiology department in a hospital information system. While this type of data is readily accessible for clinical data review it can not be accessed by other applications to perform medical decision support, quality assurance, and outcome studies. In an attempt to solve this problem, natural language processing systems have been developed and tested against chest x-rays reports to extract relevant clinical information and make it accessible to other computer applications. We have used a natural language processing tool called SymText to extract relevant clinical information from a different type of radiology report, the Ventilation/Perfusion lung scan report. Results of this effort can be analyzed in terms of precision and recall. The overall precision was 0.88 and recall was 0.92. In addition, the natural language processing system functions differently in reports with and without an impression section. If this type of information can be successfully extracted from radiology reports, one can develop quality monitors for the diagnostic performance of the radiologist by correlating the impressions with gold standard data present in a hospital information system. Avoiding the manual effort previously necessary to create quality assurance data, can lead to a higher frequency of quality review in a radiology department.

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Mesh:

Year:  1998        PMID: 9929341      PMCID: PMC2232386     

Source DB:  PubMed          Journal:  Proc AMIA Symp        ISSN: 1531-605X


  8 in total

1.  A natural language parsing system for encoding admitting diagnoses.

Authors:  P J Haug; L Christensen; M Gundersen; B Clemons; S Koehler; K Bauer
Journal:  Proc AMIA Annu Fall Symp       Date:  1997

2.  Identification of findings suspicious for breast cancer based on natural language processing of mammogram reports.

Authors:  N L Jain; C Friedman
Journal:  Proc AMIA Annu Fall Symp       Date:  1997

3.  Development and evaluation of a computerized admission diagnoses encoding system.

Authors:  M L Gundersen; P J Haug; T A Pryor; R van Bree; S Koehler; K Bauer; B Clemons
Journal:  Comput Biomed Res       Date:  1996-10

4.  A schema for representing medical language applied to clinical radiology.

Authors:  C Friedman; J J Cimino; S B Johnson
Journal:  J Am Med Inform Assoc       Date:  1994 May-Jun       Impact factor: 4.497

Review 5.  Natural language processing and the representation of clinical data.

Authors:  N Sager; M Lyman; C Bucknall; N Nhan; L J Tick
Journal:  J Am Med Inform Assoc       Date:  1994 Mar-Apr       Impact factor: 4.497

6.  A natural language understanding system combining syntactic and semantic techniques.

Authors:  P Haug; S Koehler; L M Lau; P Wang; R Rocha; S Huff
Journal:  Proc Annu Symp Comput Appl Med Care       Date:  1994

7.  Quality assessment and improvement: what radiologists do and think.

Authors:  C H Deitch; W C Chan; J H Sunshine; M D Zinninger; P N Cascade; S T Cochran
Journal:  AJR Am J Roentgenol       Date:  1994-11       Impact factor: 3.959

8.  Monitoring free-text data using medical language processing.

Authors:  D Zingmond; L A Lenert
Journal:  Comput Biomed Res       Date:  1993-10
  8 in total
  11 in total

1.  Classification algorithms applied to narrative reports.

Authors:  A Wilcox; G Hripcsak
Journal:  Proc AMIA Symp       Date:  1999

2.  Automatic detection of acute bacterial pneumonia from chest X-ray reports.

Authors:  M Fiszman; W W Chapman; D Aronsky; R S Evans; P J Haug
Journal:  J Am Med Inform Assoc       Date:  2000 Nov-Dec       Impact factor: 4.497

3.  Reference standards, judges, and comparison subjects: roles for experts in evaluating system performance.

Authors:  George Hripcsak; Adam Wilcox
Journal:  J Am Med Inform Assoc       Date:  2002 Jan-Feb       Impact factor: 4.497

4.  Information from Searching Content with an Ontology-Utilizing Toolkit (iSCOUT).

Authors:  Ronilda Lacson; Katherine P Andriole; Luciano M Prevedello; Ramin Khorasani
Journal:  J Digit Imaging       Date:  2012-08       Impact factor: 4.056

5.  Mayo clinical Text Analysis and Knowledge Extraction System (cTAKES): architecture, component evaluation and applications.

Authors:  Guergana K Savova; James J Masanz; Philip V Ogren; Jiaping Zheng; Sunghwan Sohn; Karin C Kipper-Schuler; Christopher G Chute
Journal:  J Am Med Inform Assoc       Date:  2010 Sep-Oct       Impact factor: 4.497

6.  Automation of a problem list using natural language processing.

Authors:  Stephane Meystre; Peter J Haug
Journal:  BMC Med Inform Decis Mak       Date:  2005-08-31       Impact factor: 2.796

7.  Anaphoric relations in the clinical narrative: corpus creation.

Authors:  Guergana K Savova; Wendy W Chapman; Jiaping Zheng; Rebecca S Crowley
Journal:  J Am Med Inform Assoc       Date:  2011-04-01       Impact factor: 4.497

8.  Developing a section labeler for clinical documents.

Authors:  Peter J Haug; Xinzi Wu; Jeffery P Ferraro; Guergana K Savova; Stanley M Huff; Christopher G Chute
Journal:  AMIA Annu Symp Proc       Date:  2014-11-14

9.  Assessing Inaccuracies in Automated Information Extraction of Breast Imaging Findings.

Authors:  Ronilda Lacson; Martha E Goodrich; Kimberly Harris; Phyllis Brawarsky; Jennifer S Haas
Journal:  J Digit Imaging       Date:  2017-04       Impact factor: 4.056

Review 10.  Coreference resolution: a review of general methodologies and applications in the clinical domain.

Authors:  Jiaping Zheng; Wendy W Chapman; Rebecca S Crowley; Guergana K Savova
Journal:  J Biomed Inform       Date:  2011-08-12       Impact factor: 6.317

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