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Literature DB >> 21856441

Coreference resolution: a review of general methodologies and applications in the clinical domain.

Jiaping Zheng¹, Wendy W Chapman, Rebecca S Crowley, Guergana K Savova.

Abstract

Coreference resolution is the task of determining linguistic expressions that refer to the same real-world entity in natural language. Research on coreference resolution in the general English domain dates back to 1960s and 1970s. However, research on coreference resolution in the clinical free text has not seen major development. The recent US government initiatives that promote the use of electronic health records (EHRs) provide opportunities to mine patient notes as more and more health care institutions adopt EHR. Our goal was to review recent advances in general purpose coreference resolution to lay the foundation for methodologies in the clinical domain, facilitated by the availability of a shared lexical resource of gold standard coreference annotations, the Ontology Development and Information Extraction (ODIE) corpus.

Entities: Chemical Disease Gene Species

Mesh：

Year: 2011 PMID： 21856441 PMCID： PMC3226856 DOI： 10.1016/j.jbi.2011.08.006

Source DB: PubMed Journal: J Biomed Inform ISSN： 1532-0464 Impact factor: 6.317

23 in total

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Authors: Qing T Zeng; Sergey Goryachev; Scott Weiss; Margarita Sordo; Shawn N Murphy; Ross Lazarus
Journal: BMC Med Inform Decis Mak Date: 2006-07-26 Impact factor: 2.796

18 in total

Coreference resolution: a review of general methodologies and applications in the clinical domain.

1. MedSynDiKATe--design considerations for an ontology-based medical text understanding system.

2. Automatic detection of acute bacterial pneumonia from chest X-ray reports.

3. MEDSYNDIKATE--a natural language system for the extraction of medical information from findings reports.

4. GENIA corpus--semantically annotated corpus for bio-textmining.

5. Domain-specific language models and lexicons for tagging.

6. Automatic extraction of PIOPED interpretations from ventilation/perfusion lung scan reports.

7. The Yale cTAKES extensions for document classification: architecture and application.

8. A general natural-language text processor for clinical radiology.

9. A natural language understanding system combining syntactic and semantic techniques.

10. Extracting principal diagnosis, co-morbidity and smoking status for asthma research: evaluation of a natural language processing system.

1. A system for coreference resolution for the clinical narrative.

Review 2. Evaluating the state of the art in coreference resolution for electronic medical records.

3. MCORES: a system for noun phrase coreference resolution for clinical records.

4. Coreference analysis in clinical notes: a multi-pass sieve with alternate anaphora resolution modules.

5. Automatic discourse connective detection in biomedical text.

6. Imaging-based observational databases for clinical problem solving: the role of informatics.

7. Mining the pharmacogenomics literature--a survey of the state of the art.

8. Temporal Annotation in the Clinical Domain.

9. A supervised framework for resolving coreference in clinical records.

10. Towards generalizable entity-centric clinical coreference resolution.