Literature DB >> 9922272

Archaeal nucleosome positioning by CTG repeats.

K Sandman1, J N Reeve.   

Abstract

DNA shape recognition determines the preferred binding sites for sequence-independent DNA binding proteins, and here we document that archaeal histones assemble archaeal nucleosomes in vitro centered preferentially within (CTG)6 and (CTG)8 repeats, close to junctions with flanking mixed-sequence DNA. Archaeal nucleosomes were not positioned by (CTG)4-, (CTG)5-, or (CTG)3AA(CTG)3-containing DNA sequences. The features of CTG repeat-containing sequences that direct eucaryal nucleosome positioning may also be similarly recognized by archaeal histones.

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Year:  1999        PMID： 9922272      PMCID： PMC93475     

Source DB:  PubMed          Journal:  J Bacteriol        ISSN： 0021-9193            Impact factor:   3.490


  15 in total

1.  Histone contributions to the structure of DNA in the nucleosome.

Authors:  J J Hayes; D J Clark; A P Wolffe
Journal:  Proc Natl Acad Sci U S A       Date:  1991-08-01       Impact factor: 11.205

2.  Nucleosome positioning is determined by the (H3-H4)2 tetramer.

Authors:  F Dong; K E van Holde
Journal:  Proc Natl Acad Sci U S A       Date:  1991-12-01       Impact factor: 11.205

3.  Nucleosome assembly on CTG triplet repeats.

Authors:  J S Godde; A P Wolffe
Journal:  J Biol Chem       Date:  1996-06-21       Impact factor: 5.157

4.  Flexible DNA: genetically unstable CTG.CAG and CGG.CCG from human hereditary neuromuscular disease genes.

Authors:  A Bacolla; R Gellibolian; M Shimizu; S Amirhaeri; S Kang; K Ohshima; J E Larson; S C Harvey; B D Stollar; R D Wells
Journal:  J Biol Chem       Date:  1997-07-04       Impact factor: 5.157

Review 5.  Archaeal histones, nucleosomes, and transcription initiation.

Authors:  J N Reeve; K Sandman; C J Daniels
Journal:  Cell       Date:  1997-06-27       Impact factor: 41.582

6.  Crystal structure of an IHF-DNA complex: a protein-induced DNA U-turn.

Authors:  P A Rice; S Yang; K Mizuuchi; H A Nash
Journal:  Cell       Date:  1996-12-27       Impact factor: 41.582

Review 7.  CTG repeats associated with human genetic disease are inherently flexible.

Authors:  P D Chastain; R R Sinden
Journal:  J Mol Biol       Date:  1998-01-23       Impact factor: 5.469

8.  Searching for and predicting the activity of sites for DNA binding proteins: compilation and analysis of the binding sites for Escherichia coli integration host factor (IHF).

Authors:  J A Goodrich; M L Schwartz; W R McClure
Journal:  Nucleic Acids Res       Date:  1990-09-11       Impact factor: 16.971

9.  Archaeal nucleosomes.

Authors:  S L Pereira; R A Grayling; R Lurz; J N Reeve
Journal:  Proc Natl Acad Sci U S A       Date:  1997-11-11       Impact factor: 11.205

10.  Growth-phase-dependent synthesis of histones in the archaeon Methanothermus fervidus.

Authors:  K Sandman; R A Grayling; B Dobrinski; R Lurz; J N Reeve
Journal:  Proc Natl Acad Sci U S A       Date:  1994-12-20       Impact factor: 11.205
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  2 in total

Review 1.  Comparative genomics and molecular dynamics of DNA repeats in eukaryotes.

Authors:  Guy-Franck Richard; Alix Kerrest; Bernard Dujon
Journal:  Microbiol Mol Biol Rev       Date:  2008-12       Impact factor: 11.056

2.  Mutational analysis of genes encoding chromatin proteins in the archaeon Methanococcus voltae indicates their involvement in the regulation of gene expression.

Authors:  I Heinicke; J Müller; M Pittelkow; A Klein
Journal:  Mol Genet Genomics       Date:  2004-07-07       Impact factor: 3.291
  2 in total

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