Literature DB >> 15241681

Mutational analysis of genes encoding chromatin proteins in the archaeon Methanococcus voltae indicates their involvement in the regulation of gene expression.

I Heinicke1, J Müller, M Pittelkow, A Klein.   

Abstract

Several genes for chromatin proteins are known in Archaea. These include histones and histone-like proteins in Euryarchaeota, and a DNA binding protein, Alba, which was first detected in the crenarchaeote Sulfolobus solfataricus and is thought to be involved in transcriptional regulation. The methanogenic archaeon Methanococcus voltae harbors four genes coding for all these three types of chromatin proteins. Deletion mutants for the two histone genes ( hstAand hstB), the gene encoding the histone-like protein ( hmvA) and the gene for the Alba homologue ( albA) have now been constructed in this organism. Although all single mutants were viable, deletion of hstA resulted in slow growth. Two transcripts were detected for each of the two histone genes. These were expressed in different relative amounts, which were correlated with different growth phases. Cell extracts obtained from the different mutants exhibited altered protein patterns, as revealed by 2D gel electrophoresis, indicating that the chromatin proteins are involved in gene regulation in M. voltae.

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Year:  2004        PMID: 15241681     DOI: 10.1007/s00438-004-1033-5

Source DB:  PubMed          Journal:  Mol Genet Genomics        ISSN: 1617-4623            Impact factor:   3.291


  60 in total

Review 1.  Structure and functional relationships of archaeal and eukaryal histones and nucleosomes.

Authors:  K Sandman; J N Reeve
Journal:  Arch Microbiol       Date:  2000-03       Impact factor: 2.552

Review 2.  DNA repeats and archaeal nucleosome positioning.

Authors:  K A Bailey; J N Reeve
Journal:  Res Microbiol       Date:  1999 Nov-Dec       Impact factor: 3.992

Review 3.  Histone acetylation: a switch between repressive and permissive chromatin. Second in review series on chromatin dynamics.

Authors:  Anton Eberharter; Peter B Becker
Journal:  EMBO Rep       Date:  2002-03       Impact factor: 8.807

Review 4.  The histone tails of the nucleosome.

Authors:  K Luger; T J Richmond
Journal:  Curr Opin Genet Dev       Date:  1998-04       Impact factor: 5.578

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Authors:  K Krüger; T Hermann; V Armbruster; F Pfeifer
Journal:  J Mol Biol       Date:  1998-06-19       Impact factor: 5.469

6.  Crystal structure of the nucleosome core particle at 2.8 A resolution.

Authors:  K Luger; A W Mäder; R K Richmond; D F Sargent; T J Richmond
Journal:  Nature       Date:  1997-09-18       Impact factor: 49.962

7.  Nucleotide sequence of a gene encoding a histone-like protein in the archaeon Methanococcus voltae.

Authors:  K Agha-Amiri; A Klein
Journal:  Nucleic Acids Res       Date:  1993-03-25       Impact factor: 16.971

8.  Regions of variant histone His2AvD required for Drosophila development.

Authors:  M J Clarkson; J R Wells; F Gibson; R Saint; D J Tremethick
Journal:  Nature       Date:  1999-06-17       Impact factor: 49.962

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Authors:  Junsong Sun; Albrecht Klein
Journal:  Mol Microbiol       Date:  2004-04       Impact factor: 3.501

10.  HMf, a histone-related protein from the hyperthermophilic archaeon Methanothermus fervidus, binds preferentially to DNA containing phased tracts of adenines.

Authors:  M T Howard; K Sandman; J N Reeve; J D Griffith
Journal:  J Bacteriol       Date:  1992-12       Impact factor: 3.490

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  14 in total

1.  MarR-like transcriptional regulator involved in detoxification of aromatic compounds in Sulfolobus solfataricus.

Authors:  Gabriella Fiorentino; Raffaele Ronca; Raffaele Cannio; Mosè Rossi; Simonetta Bartolucci
Journal:  J Bacteriol       Date:  2007-08-03       Impact factor: 3.490

2.  The Sac10b homolog in Methanococcus maripaludis binds DNA at specific sites.

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Journal:  J Bacteriol       Date:  2009-01-23       Impact factor: 3.490

Review 3.  The interplay between nucleoid organization and transcription in archaeal genomes.

Authors:  Eveline Peeters; Rosalie P C Driessen; Finn Werner; Remus T Dame
Journal:  Nat Rev Microbiol       Date:  2015-05-06       Impact factor: 60.633

Review 4.  Transcription Regulation in Archaea.

Authors:  Alexandra M Gehring; Julie E Walker; Thomas J Santangelo
Journal:  J Bacteriol       Date:  2016-06-27       Impact factor: 3.490

Review 5.  The Role of Archaeal Chromatin in Transcription.

Authors:  Travis J Sanders; Craig J Marshall; Thomas J Santangelo
Journal:  J Mol Biol       Date:  2019-05-11       Impact factor: 5.469

6.  An archaeal histone is required for transformation of Thermococcus kodakarensis.

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Journal:  J Bacteriol       Date:  2012-10-12       Impact factor: 3.490

7.  Archaeal chromatin proteins histone HMtB and Alba have lost DNA-binding ability in laboratory strains of Methanothermobacter thermautotrophicus.

Authors:  Kathleen Sandman; Hélène Louvel; Rachel Y Samson; Suzette L Pereira; John N Reeve
Journal:  Extremophiles       Date:  2008-08-23       Impact factor: 2.395

8.  Biochemical and structural insights into RNA binding by Ssh10b, a member of the highly conserved Sac10b protein family in Archaea.

Authors:  Li Guo; Jingjin Ding; Rong Guo; Yanjie Hou; Da-Cheng Wang; Li Huang
Journal:  J Biol Chem       Date:  2013-12-04       Impact factor: 5.157

9.  Genome-Wide Identification of the Alba Gene Family in Plants and Stress-Responsive Expression of the Rice Alba Genes.

Authors:  Jitendra Kumar Verma; Vijay Wardhan; Deepali Singh; Subhra Chakraborty; Niranjan Chakraborty
Journal:  Genes (Basel)       Date:  2018-03-28       Impact factor: 4.096

10.  Overview of the genetic tools in the Archaea.

Authors:  Haruyuki Atomi; Tadayuki Imanaka; Toshiaki Fukui
Journal:  Front Microbiol       Date:  2012-10-02       Impact factor: 5.640

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