Literature DB >> 9914192

Hydrophobic core packing and protein design.

G A Lazar1, T M Handel.   

Abstract

Over the past few years, we have witnessed exciting advances in protein design. Several groups have reported success in the design of hydrophobic cores, and the principles developed in these studies have been recently applied to the full sequence design of a small protein motif and the design of a catalytically active metal center. These successes suggest that designing large, functional proteins in computero is more feasible than ever before.

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Year:  1998        PMID: 9914192     DOI: 10.1016/s1367-5931(98)80102-6

Source DB:  PubMed          Journal:  Curr Opin Chem Biol        ISSN: 1367-5931            Impact factor:   8.822


  10 in total

1.  Rotamer strain as a determinant of protein structural specificity.

Authors:  G A Lazar; E C Johnson; J R Desjarlais; T M Handel
Journal:  Protein Sci       Date:  1999-12       Impact factor: 6.725

Review 2.  De novo design of helical bundles as models for understanding protein folding and function.

Authors:  R B Hill; D P Raleigh; A Lombardi; W F DeGrado
Journal:  Acc Chem Res       Date:  2000-11       Impact factor: 22.384

3.  In silico protein design by combinatorial assembly of protein building blocks.

Authors:  Hui-Hsu Gavin Tsai; Chung-Jung Tsai; Buyong Ma; Ruth Nussinov
Journal:  Protein Sci       Date:  2004-10       Impact factor: 6.725

4.  Genetic algorithms as a tool for helix design--computational and experimental studies on prion protein helix 1.

Authors:  Jan Ziegler; Stephan Schwarzinger
Journal:  J Comput Aided Mol Des       Date:  2006-03-16       Impact factor: 3.686

5.  Atomic interaction networks in the core of protein domains and their native folds.

Authors:  Venkataramanan Soundararajan; Rahul Raman; S Raguram; V Sasisekharan; Ram Sasisekharan
Journal:  PLoS One       Date:  2010-02-23       Impact factor: 3.240

6.  A multi-factors rational design strategy for enhancing the thermostability of Escherichia coli AppA phytase.

Authors:  Baojin Fei; Hui Xu; Yu Cao; Shuhan Ma; Hongxiu Guo; Tao Song; Dairong Qiao; Yi Cao
Journal:  J Ind Microbiol Biotechnol       Date:  2013-03-14       Impact factor: 3.346

Review 7.  Design and engineering of artificial oxygen-activating metalloenzymes.

Authors:  Flavia Nastri; Marco Chino; Ornella Maglio; Ambika Bhagi-Damodaran; Yi Lu; Angela Lombardi
Journal:  Chem Soc Rev       Date:  2016-06-24       Impact factor: 54.564

8.  Retrostructural analysis of metalloproteins: application to the design of a minimal model for diiron proteins.

Authors:  A Lombardi; C M Summa; S Geremia; L Randaccio; V Pavone; W F DeGrado
Journal:  Proc Natl Acad Sci U S A       Date:  2000-06-06       Impact factor: 11.205

Review 9.  Recent advances in automated protein design and its future challenges.

Authors:  Dani Setiawan; Jeffrey Brender; Yang Zhang
Journal:  Expert Opin Drug Discov       Date:  2018-04-25       Impact factor: 6.098

10.  Role of solvent accessibility for aggregation-prone patches in protein folding.

Authors:  Avinash Mishra; Shoba Ranganathan; B Jayaram; Abdul Sattar
Journal:  Sci Rep       Date:  2018-08-27       Impact factor: 4.379

  10 in total

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