Literature DB >> 9860938

DNA curvature and deformation in protein-DNA complexes: a step in the right direction.

D M Crothers1.   

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Year:  1998        PMID： 9860938      PMCID： PMC33930          DOI： 10.1073/pnas.95.26.15163

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN： 0027-8424            Impact factor:   11.205


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  25 in total

1.  Crystal structure at 1.7 A of the bovine papillomavirus-1 E2 DNA-binding domain bound to its DNA target.

Authors:  R S Hegde; S R Grossman; L A Laimins; P B Sigler
Journal:  Nature       Date:  1992-10-08       Impact factor: 49.962

2.  DNA-binding domains of Fos and Jun do not induce DNA curvature: an investigation with solution and gel methods.

Authors:  A Sitlani; D M Crothers
Journal:  Proc Natl Acad Sci U S A       Date:  1998-02-17       Impact factor: 11.205

3.  Flexible DNA: genetically unstable CTG.CAG and CGG.CCG from human hereditary neuromuscular disease genes.

Authors:  A Bacolla; R Gellibolian; M Shimizu; S Amirhaeri; S Kang; K Ohshima; J E Larson; S C Harvey; B D Stollar; R D Wells
Journal:  J Biol Chem       Date:  1997-07-04       Impact factor: 5.157

4.  Characterization of the ATF/CREB site and its complex with GCN4.

Authors:  S C Hockings; J D Kahn; D M Crothers
Journal:  Proc Natl Acad Sci U S A       Date:  1998-02-17       Impact factor: 11.205

5.  DNA targets for certain bZIP proteins distinguished by an intrinsic bend.

Authors:  D N Paolella; C R Palmer; A Schepartz
Journal:  Science       Date:  1994-05-20       Impact factor: 47.728

6.  B-DNA twisting correlates with base-pair morphology.

Authors:  A A Gorin; V B Zhurkin; W K Olson
Journal:  J Mol Biol       Date:  1995-03-17       Impact factor: 5.469

7.  Determinants of repressor/operator recognition from the structure of the trp operator binding site.

Authors:  Z Shakked; G Guzikevich-Guerstein; F Frolow; D Rabinovich; A Joachimiak; P B Sigler
Journal:  Nature       Date:  1994-03-31       Impact factor: 49.962

8.  Sequence elements responsible for DNA curvature.

Authors:  T E Haran; J D Kahn; D M Crothers
Journal:  J Mol Biol       Date:  1994-11-25       Impact factor: 5.469

9.  The crystal structure of C-C-A-T-T-A-A-T-G-G. Implications for bending of B-DNA at T-A steps.

Authors:  D S Goodsell; M Kaczor-Grzeskowiak; R E Dickerson
Journal:  J Mol Biol       Date:  1994-05-27       Impact factor: 5.469

10.  Sequence-dependent bending propensity of DNA as revealed by DNase I: parameters for trinucleotides.

Authors:  I Brukner; R Sánchez; D Suck; S Pongor
Journal:  EMBO J       Date:  1995-04-18       Impact factor: 11.598
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  28 in total

1.  Mechanism for specificity by HMG-1 in enhanceosome assembly.

Authors:  K B Ellwood; Y M Yen; R C Johnson; M Carey
Journal:  Mol Cell Biol       Date:  2000-06       Impact factor: 4.272

2.  Global structure and mechanical properties of a 10-bp nucleosome positioning motif.

Authors:  M Roychoudhury; A Sitlani; J Lapham; D M Crothers
Journal:  Proc Natl Acad Sci U S A       Date:  2000-12-05       Impact factor: 11.205

3.  A theoretical model for the prediction of sequence-dependent nucleosome thermodynamic stability.

Authors:  C Anselmi; G Bocchinfuso; P De Santis; M Savino; A Scipioni
Journal:  Biophys J       Date:  2000-08       Impact factor: 4.033

4.  High-throughput approach for detection of DNA bending and flexibility based on cyclization.

Authors:  Yongli Zhang; Donald M Crothers
Journal:  Proc Natl Acad Sci U S A       Date:  2003-03-10       Impact factor: 11.205

5.  Base pair opening within B-DNA: free energy pathways for GC and AT pairs from umbrella sampling simulations.

Authors:  Emmanuel Giudice; Péter Várnai; Richard Lavery
Journal:  Nucleic Acids Res       Date:  2003-03-01       Impact factor: 16.971

6.  Sequence-dependent DNA curvature and flexibility from scanning force microscopy images.

Authors:  Anita Scipioni; Claudio Anselmi; Giampaolo Zuccheri; Bruno Samori; Pasquale De Santis
Journal:  Biophys J       Date:  2002-11       Impact factor: 4.033

7.  The RNA-protein complex: direct probing of the interfacial recognition dynamics and its correlation with biological functions.

Authors:  Tianbing Xia; Hans-Christian Becker; Chaozhi Wan; Adam Frankel; Richard W Roberts; Ahmed H Zewail
Journal:  Proc Natl Acad Sci U S A       Date:  2003-06-18       Impact factor: 11.205

Review 8.  Computational approaches to identify promoters and cis-regulatory elements in plant genomes.

Authors:  Stephane Rombauts; Kobe Florquin; Magali Lescot; Kathleen Marchal; Pierre Rouzé; Yves van de Peer
Journal:  Plant Physiol       Date:  2003-07       Impact factor: 8.340

9.  Recognition of the DNA sequence by an inorganic crystal surface.

Authors:  Beatrice Sampaolese; Anna Bergia; Anita Scipioni; Giampaolo Zuccheri; Maria Savino; Bruno Samori; Pasquale De Santis
Journal:  Proc Natl Acad Sci U S A       Date:  2002-10-02       Impact factor: 11.205

10.  Changes in DNA bending induced by restricting nucleotide ring pucker studied by weak alignment NMR spectroscopy.

Authors:  Zhengrong Wu; Melissa Maderia; Joseph J Barchi; Victor E Marquez; Ad Bax
Journal:  Proc Natl Acad Sci U S A       Date:  2004-12-23       Impact factor: 11.205
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