Literature DB >> 12361979

Recognition of the DNA sequence by an inorganic crystal surface.

Beatrice Sampaolese1, Anna Bergia, Anita Scipioni, Giampaolo Zuccheri, Maria Savino, Bruno Samori, Pasquale De Santis.   

Abstract

The sequence-dependent curvature is generally recognized as an important and biologically relevant property of DNA because it is involved in the formation and stability of association complexes with proteins. When a DNA tract, intrinsically curved for the periodical recurrence on the same strand of A-tracts phased with the B-DNA periodicity, is deposited on a flat surface, it exposes to that surface either a T- or an A-rich face. The surface of a freshly cleaved mica crystal recognizes those two faces and preferentially interacts with the former one. Statistical analysis of scanning force microscopy (SFM) images provides evidence of this recognition between an inorganic crystal surface and nanoscale structures of double-stranded DNA. This finding could open the way toward the use of the sequence-dependent adhesion to specific crystal faces for nanotechnological purposes.

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Year:  2002        PMID: 12361979      PMCID: PMC129714          DOI: 10.1073/pnas.202471699

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  12 in total

1.  Selection of peptides with semiconductor binding specificity for directed nanocrystal assembly.

Authors:  S R Whaley; D S English; E L Hu; P F Barbara; A M Belcher
Journal:  Nature       Date:  2000-06-08       Impact factor: 49.962

2.  Validity of the nearest-neighbor approximation in the evaluation of the electrophoretic manifestations of DNA curvature.

Authors:  P De Santis; A Palleschi; M Savino; A Scipioni
Journal:  Biochemistry       Date:  1990-10-02       Impact factor: 3.162

3.  Bent helical structure in kinetoplast DNA.

Authors:  J C Marini; S D Levene; D M Crothers; P T Englund
Journal:  Proc Natl Acad Sci U S A       Date:  1982-12       Impact factor: 11.205

4.  The curvature vector in nucleosomal DNAs and theoretical prediction of nucleosome positioning.

Authors:  D Boffelli; P De Santis; A Palleschi; M Savino
Journal:  Biophys Chem       Date:  1991-02       Impact factor: 2.352

5.  Scanning force microscopy of DNA deposited onto mica: equilibration versus kinetic trapping studied by statistical polymer chain analysis.

Authors:  C Rivetti; M Guthold; C Bustamante
Journal:  J Mol Biol       Date:  1996-12-20       Impact factor: 5.469

6.  Mapping the intrinsic curvature and flexibility along the DNA chain.

Authors:  G Zuccheri; A Scipioni; V Cavaliere; G Gargiulo; P De Santis; B Samorì
Journal:  Proc Natl Acad Sci U S A       Date:  2001-02-27       Impact factor: 11.205

7.  Sequence periodicities in chicken nucleosome core DNA.

Authors:  S C Satchwell; H R Drew; A A Travers
Journal:  J Mol Biol       Date:  1986-10-20       Impact factor: 5.469

8.  Visualization of the bent helix in kinetoplast DNA by electron microscopy.

Authors:  J Griffith; M Bleyman; C A Rauch; P A Kitchin; P T Englund
Journal:  Cell       Date:  1986-08-29       Impact factor: 41.582

9.  Helical periodicity of DNA determined by enzyme digestion.

Authors:  D Rhodes; A Klug
Journal:  Nature       Date:  1980-08-07       Impact factor: 49.962

10.  A highly bent fragment of Crithidia fasciculata kinetoplast DNA.

Authors:  P A Kitchin; V A Klein; K A Ryan; K L Gann; C A Rauch; D S Kang; R D Wells; P T Englund
Journal:  J Biol Chem       Date:  1986-08-25       Impact factor: 5.157

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  3 in total

1.  A possible role of DNA superstructures in genome evolution.

Authors:  Claudio Anselmi; Pasquale De Santis; Raffaella Paparcone; Maria Savino; Anita Scipioni
Journal:  Orig Life Evol Biosph       Date:  2004-02       Impact factor: 1.950

2.  Label-free, atomic force microscopy-based mapping of DNA intrinsic curvature for the nanoscale comparative analysis of bent duplexes.

Authors:  Renato Buzio; Luca Repetto; Francesca Giacopelli; Roberto Ravazzolo; Ugo Valbusa
Journal:  Nucleic Acids Res       Date:  2012-03-08       Impact factor: 16.971

3.  Symmetric curvature descriptors for label-free analysis of DNA.

Authors:  Renato Buzio; Luca Repetto; Francesca Giacopelli; Roberto Ravazzolo; Ugo Valbusa
Journal:  Sci Rep       Date:  2014-09-24       Impact factor: 4.379

  3 in total

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