Literature DB >> 9847210

Transcription Regulatory Regions Database (TRRD):its status in 1999.

N A Kolchanov1, E A Ananko, O A Podkolodnaya, E V Ignatieva, I L Stepanenko, O V Kel-Margoulis, A E Kel, T I Merkulova, T N Goryachkovskaya, T V Busygina, F A Kolpakov, N L Podkolodny, A N Naumochkin, A G Romashchenko.   

Abstract

The Transcription Regulatory Regions Database (TRRD) is a curated database designed for accumulation of experimental data on extended regulatory regions of eukaryotic genes, the regulatory elements they contain, i.e., transcription factor binding sites, promoters, enhancers, silencers, etc., and expression patterns of the genes. Release 4.1 of TRRD offers a number of significant improvements, in particular, a more detailed description of transcription factor binding sites, transcription factors per se, and gene expression patterns in a computer-readable format. In addition, the new TRRD release provides considerably more references to other molecular biological databases. TRRD 4.1 is installed under SRS and is available through the WWW at http://www.bionet.nsc.ru/trrd/

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Year:  1999        PMID: 9847210      PMCID: PMC148165          DOI: 10.1093/nar/27.1.303

Source DB:  PubMed          Journal:  Nucleic Acids Res        ISSN: 0305-1048            Impact factor:   16.971


  7 in total

1.  Transcription regulatory regions database (TRRD): its status in 2000.

Authors:  N A Kolchanov; O A Podkolodnaya; E A Ananko; E V Ignatieva; I L Stepanenko; O V Kel-Margoulis; A E Kel; T I Merkulova; T N Goryachkovskaya; T V Busygina; F A Kolpakov; N L Podkolodny; A N Naumochkin; I M Korostishevskaya; A G Romashchenko; G C Overton
Journal:  Nucleic Acids Res       Date:  2000-01-01       Impact factor: 16.971

2.  The IDB and IEDB: intron sequence and evolution databases.

Authors:  N J Schisler; J D Palmer
Journal:  Nucleic Acids Res       Date:  2000-01-01       Impact factor: 16.971

3.  The eukaryotic promoter database (EPD).

Authors:  R C Périer; V Praz; T Junier; C Bonnard; P Bucher
Journal:  Nucleic Acids Res       Date:  2000-01-01       Impact factor: 16.971

4.  SELEX_DB: an activated database on selected randomized DNA/RNA sequences addressed to genomic sequence annotation.

Authors:  J V Ponomarenko; G V Orlova; M P Ponomarenko; S V Lavryushev; A S Frolov; S V Zybova; N A Kolchanov
Journal:  Nucleic Acids Res       Date:  2000-01-01       Impact factor: 16.971

5.  COMPEL: a database on composite regulatory elements providing combinatorial transcriptional regulation.

Authors:  O V Kel-Margoulis; A G Romashchenko; N A Kolchanov; E Wingender; A E Kel
Journal:  Nucleic Acids Res       Date:  2000-01-01       Impact factor: 16.971

6.  Transcription Regulatory Regions Database (TRRD): its status in 2002.

Authors:  N A Kolchanov; E V Ignatieva; E A Ananko; O A Podkolodnaya; I L Stepanenko; T I Merkulova; M A Pozdnyakov; N L Podkolodny; A N Naumochkin; A G Romashchenko
Journal:  Nucleic Acids Res       Date:  2002-01-01       Impact factor: 16.971

Review 7.  Network integration and graph analysis in mammalian molecular systems biology.

Authors:  A Ma'ayan
Journal:  IET Syst Biol       Date:  2008-09       Impact factor: 1.615

  7 in total

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