Literature DB >> 9847209

ASDB: database of alternatively spliced genes.

M S Gelfand1, I Dubchak, I Dralyuk, M Zorn.   

Abstract

A database of alternatively spliced genes (ASDB) has been constructed based on (i) the results of the analysis of Swiss-Prot entries containing products of these genes and (ii) clustering procedure joining proteins that could arise by alternative splicing of the same gene. ASDB incorporates information about alternatively spliced genes, their products and expression patterns. It can be searched in order to find all products of alternative splicing produced in a particular tissue or a given organism, or all variants generated by a particular transcript. ASDB currently contains about 1700 protein sequences and can be accessed via the Internet at URL http://cbcg.nersc.gov/asdb

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Year:  1999        PMID: 9847209      PMCID: PMC148164          DOI: 10.1093/nar/27.1.301

Source DB:  PubMed          Journal:  Nucleic Acids Res        ISSN: 0305-1048            Impact factor:   16.971


  10 in total

1.  ASDB: database of alternatively spliced genes.

Authors:  I Dralyuk; M Brudno; M S Gelfand; M Zorn; I Dubchak
Journal:  Nucleic Acids Res       Date:  2000-01-01       Impact factor: 16.971

2.  The intronerator: exploring introns and alternative splicing in Caenorhabditis elegans.

Authors:  W J Kent; A M Zahler
Journal:  Nucleic Acids Res       Date:  2000-01-01       Impact factor: 16.971

3.  PipMaker--a web server for aligning two genomic DNA sequences.

Authors:  S Schwartz; Z Zhang; K A Frazer; A Smit; C Riemer; J Bouck; R Gibbs; R Hardison; W Miller
Journal:  Genome Res       Date:  2000-04       Impact factor: 9.043

Review 4.  RNA-protein interactions that regulate pre-mRNA splicing.

Authors:  Ravinder Singh
Journal:  Gene Expr       Date:  2002

5.  Impact of alternative initiation, splicing, and termination on the diversity of the mRNA transcripts encoded by the mouse transcriptome.

Authors:  Mihaela Zavolan; Shinji Kondo; Christian Schonbach; Jun Adachi; David A Hume; Yoshihide Hayashizaki; Terry Gaasterland
Journal:  Genome Res       Date:  2003-06       Impact factor: 9.043

6.  Predicting splice variant from DNA chip expression data.

Authors:  G K Hu; S J Madore; B Moldover; T Jatkoe; D Balaban; J Thomas; Y Wang
Journal:  Genome Res       Date:  2001-07       Impact factor: 9.043

7.  Frequent alternative splicing of human genes.

Authors:  A A Mironov; J W Fickett; M S Gelfand
Journal:  Genome Res       Date:  1999-12       Impact factor: 9.043

8.  Test of intron predictions reveals novel splice sites, alternatively spliced mRNAs and new introns in meiotically regulated genes of yeast.

Authors:  C A Davis; L Grate; M Spingola; M Ares
Journal:  Nucleic Acids Res       Date:  2000-04-15       Impact factor: 16.971

9.  SpliceMiner: a high-throughput database implementation of the NCBI Evidence Viewer for microarray splice variant analysis.

Authors:  Ari B Kahn; Michael C Ryan; Hongfang Liu; Barry R Zeeberg; D Curtis Jamison; John N Weinstein
Journal:  BMC Bioinformatics       Date:  2007-03-05       Impact factor: 3.169

10.  Integrating alternative splicing detection into gene prediction.

Authors:  Sylvain Foissac; Thomas Schiex
Journal:  BMC Bioinformatics       Date:  2005-02-10       Impact factor: 3.169

  10 in total

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