Literature DB >> 9847207

PlantCARE, a plant cis-acting regulatory element database.

S Rombauts1, P Déhais, M Van Montagu, P Rouzé.   

Abstract

PlantCARE is a database of plant cis- acting regulatory elements, enhancers and repressors. Besides the transcription motifs found on a sequence, it also offers a link to the EMBL entry that contains the full gene sequence as well as a description of the conditions in which a motif becomes functional. The information on these sites is given by matrices, consensus and individual site sequences on particular genes, depending on the available information. PlantCARE is a relational database available via the web at the URL: http://sphinx.rug.ac.be:8080/PlantCARE/

Mesh：

Year:  1999        PMID： 9847207      PMCID： PMC148162          DOI： 10.1093/nar/27.1.295

Source DB:  PubMed          Journal:  Nucleic Acids Res        ISSN： 0305-1048            Impact factor:   16.971


  158 in total

1.  The eukaryotic promoter database (EPD).

Authors:  R C Périer; V Praz; T Junier; C Bonnard; P Bucher
Journal:  Nucleic Acids Res       Date:  2000-01-01       Impact factor: 16.971

2.  TRANSFAC: an integrated system for gene expression regulation.

Authors:  E Wingender; X Chen; R Hehl; H Karas; I Liebich; V Matys; T Meinhardt; M Prüss; I Reuter; F Schacherer
Journal:  Nucleic Acids Res       Date:  2000-01-01       Impact factor: 16.971

3.  SELEX_DB: an activated database on selected randomized DNA/RNA sequences addressed to genomic sequence annotation.

Authors:  J V Ponomarenko; G V Orlova; M P Ponomarenko; S V Lavryushev; A S Frolov; S V Zybova; N A Kolchanov
Journal:  Nucleic Acids Res       Date:  2000-01-01       Impact factor: 16.971

4.  The Eukaryotic Promoter Database, EPD: new entry types and links to gene expression data.

Authors:  Viviane Praz; Rouaïda Périer; Claude Bonnard; Philipp Bucher
Journal:  Nucleic Acids Res       Date:  2002-01-01       Impact factor: 16.971

5.  PlantCARE, a database of plant cis-acting regulatory elements and a portal to tools for in silico analysis of promoter sequences.

Authors:  Magali Lescot; Patrice Déhais; Gert Thijs; Kathleen Marchal; Yves Moreau; Yves Van de Peer; Pierre Rouzé; Stephane Rombauts
Journal:  Nucleic Acids Res       Date:  2002-01-01       Impact factor: 16.971

6.  Global changes in gene expression in response to high light in Arabidopsis.

Authors:  Jan Bart Rossel; Iain W Wilson; Barry J Pogson
Journal:  Plant Physiol       Date:  2002-11       Impact factor: 8.340

7.  Molecular cloning and functional characterization of Catharanthus roseus hydroxymethylbutenyl 4-diphosphate synthase gene promoter from the methyl erythritol phosphate pathway.

Authors:  Olivia Ginis; Vincent Courdavault; Céline Melin; Arnaud Lanoue; Nathalie Giglioli-Guivarc'h; Benoit St-Pierre; Martine Courtois; Audrey Oudin
Journal:  Mol Biol Rep       Date:  2011-12-13       Impact factor: 2.316

8.  Tissue-specific and developmentally regulated expression of a cluster of tandemly arrayed cell wall-associated kinase-like kinase genes in Arabidopsis.

Authors:  Joseph A Verica; Lee Chae; Hongyun Tong; Peter Ingmire; Zheng-Hui He
Journal:  Plant Physiol       Date:  2003-10-23       Impact factor: 8.340

9.  Molecular characterization of a novel senescence-associated gene SPA15 induced during leaf senescence in sweet potato.

Authors:  Mee-Ngan Yap; Ruey-Hua Lee; Yih-Jong Huang; Chao-Jan Liao; Shu-Chen Grace Chen
Journal:  Plant Mol Biol       Date:  2003-03       Impact factor: 4.076

10.  A developmental transcriptional network for maize defines coexpression modules.

Authors:  Gregory S Downs; Yong-Mei Bi; Joseph Colasanti; Wenqing Wu; Xi Chen; Tong Zhu; Steven J Rothstein; Lewis N Lukens
Journal:  Plant Physiol       Date:  2013-02-06       Impact factor: 8.340
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