Literature DB >> 9847205

Codon usage tabulated from the international DNA sequence databases; its status 1999.

Y Nakamura1, T Gojobori, T Ikemura.   

Abstract

Frequencies for each of the 206 526 complete protein-coding genes (CDS's) have been compiled from taxonomical divisions of the GenBank DNA sequence database. The sum of the codon use of 7434 organisms has also been calculated. These data files can be obtained from anonymous ftp sites of DDBJ, DISC and EBI. The list of the codon usage of genes in an organism as well as the sum of the codon usage of the organism was made searchable by the name of organism through a web site http://www.dna.affrc.go.jp//CUTG.html

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Year:  1999        PMID: 9847205      PMCID: PMC148160          DOI: 10.1093/nar/27.1.292

Source DB:  PubMed          Journal:  Nucleic Acids Res        ISSN: 0305-1048            Impact factor:   16.971


  33 in total

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4.  Codon usage decreases the error minimization within the genetic code.

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Journal:  J Mol Evol       Date:  2003-11       Impact factor: 2.395

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6.  A comparative categorization of protein function encoded in bacterial or archeal genomic islands.

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8.  Score-based prediction of genomic islands in prokaryotic genomes using hidden Markov models.

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9.  Regulation of protein translation through mRNA structure influences MHC class I loading and T cell recognition.

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Review 10.  Manipulation of the microalgal chloroplast by genetic engineering for biotechnological utilization as a green biofactory.

Authors:  Yong Min Kwon; Kyung Woo Kim; Tae-Young Choi; Sun Young Kim; Jaoon Young Hwan Kim
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