Literature DB >> 9847173

Database on the structure of small subunit ribosomal RNA.

Y Van de Peer1, E Robbrecht, S de Hoog, A Caers, P De Rijk, R De Wachter.   

Abstract

Over 11 500 complete or nearly complete sequences are now available from the Antwerp database on small subunit ribosomal RNA. All these sequences are aligned with one another on the basis of the adopted secondary structure model, which is corroborated by the observation of compensating substitutions in the alignment. Literature references, accession numbers and taxonomic information are also compiled. The database can be consulted via the World Wide Web at URL http://rrna.uia.ac.be/ssu/

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Year:  1999        PMID： 9847173      PMCID： PMC148128          DOI： 10.1093/nar/27.1.179

Source DB:  PubMed          Journal:  Nucleic Acids Res        ISSN： 0305-1048            Impact factor:   16.971


  15 in total

1.  The European small subunit ribosomal RNA database.

Authors:  Y Van de Peer; P De Rijk; J Wuyts; T Winkelmans; R De Wachter
Journal:  Nucleic Acids Res       Date:  2000-01-01       Impact factor: 16.971

2.  Improved statistical methods reveal direct interactions between 16S and 23S rRNA.

Authors:  S T Kelley; V R Akmaev; G D Stormo
Journal:  Nucleic Acids Res       Date:  2000-12-15       Impact factor: 16.971

3.  Whole-genome trees based on the occurrence of folds and orthologs: implications for comparing genomes on different levels.

Authors:  J Lin; M Gerstein
Journal:  Genome Res       Date:  2000-06       Impact factor: 9.043

4.  Distribution of substitution rates and location of insertion sites in the tertiary structure of ribosomal RNA.

Authors:  J Wuyts; Y Van de Peer; R De Wachter
Journal:  Nucleic Acids Res       Date:  2001-12-15       Impact factor: 16.971

5.  Myzostomida: a link between trochozoans and flatworms?

Authors:  I Eeckhaut; D McHugh; P Mardulyn; R Tiedemann; D Monteyne; M Jangoux; M C Milinkovitch
Journal:  Proc Biol Sci       Date:  2000-07-22       Impact factor: 5.349

6.  Re-annotating the Mycoplasma pneumoniae genome sequence: adding value, function and reading frames.

Authors:  T Dandekar; M Huynen; J T Regula; B Ueberle; C U Zimmermann; M A Andrade; T Doerks; L Sánchez-Pulido; B Snel; M Suyama; Y P Yuan; R Herrmann; P Bork
Journal:  Nucleic Acids Res       Date:  2000-09-01       Impact factor: 16.971

7.  Secondary structure models of D2-D3 expansion segments of 28S rRNA for Hoplolaiminae species.

Authors:  Bae C H; R T Robbins; A L Szalanski
Journal:  J Nematol       Date:  2010-09       Impact factor: 1.402

8.  Predicted secondary structure for 28S and 18S rRNA from Ichneumonoidea (Insecta: Hymenoptera: Apocrita): impact on sequence alignment and phylogeny estimation.

Authors:  Joseph J Gillespie; Matthew J Yoder; Robert A Wharton
Journal:  J Mol Evol       Date:  2005-07-14       Impact factor: 2.395

9.  The right angle (RA) motif: a prevalent ribosomal RNA structural pattern found in group I introns.

Authors:  Wade W Grabow; Zhuoyun Zhuang; Zoe N Swank; Joan-Emma Shea; Luc Jaeger
Journal:  J Mol Biol       Date:  2012-09-18       Impact factor: 5.469

10.  Metagenomics survey unravels diversity of biogas microbiomes with potential to enhance productivity in Kenya.

Authors:  Samuel Mwangangi Muturi; Lucy Wangui Muthui; Paul Mwangi Njogu; Justus Mong'are Onguso; Francis Nyamu Wachira; Stephen Obol Opiyo; Roger Pelle
Journal:  PLoS One       Date:  2021-01-04       Impact factor: 3.240
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