Literature DB >> 9836578

Rational design of a functional metalloenzyme: introduction of a site for manganese binding and oxidation into a heme peroxidase.

S K Wilcox1, C D Putnam, M Sastry, J Blankenship, W J Chazin, D E McRee, D B Goodin.   

Abstract

The design of a series of functionally active models for manganese peroxidase (MnP) is described. Artificial metal binding sites were created near the heme of cytochrome c peroxidase (CCP) such that one of the heme propionates could serve as a metal ligand. At least two of these designs, MP6.1 and MP6.8, bind Mn2+ with Kd congruent with 0.2 mM, react with H2O2 to form stable ferryl heme species, and catalyze the steady-state oxidation of Mn2+ at enhanced rates relative to WT CCP. The kinetic parameters for this activity vary considerably in the presence of various dicarboxylic acid chelators, suggesting that the similar features displayed by native MnP are largely intrinsic to the manganese oxidation reaction rather than due to a specific interaction between the chelator and enzyme. Analysis of pre-steady-state data shows that electron transfer from Mn2+ to both the Trp-191 radical and the ferryl heme center of compound ES is enhanced by the metal site mutations, with transfer to the ferryl center showing the greatest stimulation. These properties are perplexingly similar to those reported for an alternate model for this site (1), despite rather distinct features of the two designs. Finally, we have determined the crystal structure at 1.9 A of one of our designs, MP6.8, in the presence of MnSO4. A weakly occupied metal at the designed site appears to coordinate two of the proposed ligands, Asp-45 and the heme 7-propionate. Paramagnetic nuclear magnetic resonance spectra also suggest that Mn2+ is interacting with the heme 7-propionate in MP6.8. The structure provides a basis for understanding the similar results of Yeung et al. (1), and suggests improvements for future designs.

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Year:  1998        PMID: 9836578     DOI: 10.1021/bi9815039

Source DB:  PubMed          Journal:  Biochemistry        ISSN: 0006-2960            Impact factor:   3.162


  12 in total

1.  Nanohedra: using symmetry to design self assembling protein cages, layers, crystals, and filaments.

Authors:  J E Padilla; C Colovos; T O Yeates
Journal:  Proc Natl Acad Sci U S A       Date:  2001-02-20       Impact factor: 11.205

2.  Metalloprotein and metallo-DNA/RNAzyme design: current approaches, success measures, and future challenges.

Authors:  Yi Lu
Journal:  Inorg Chem       Date:  2006-12-11       Impact factor: 5.165

Review 3.  Protein design: toward functional metalloenzymes.

Authors:  Fangting Yu; Virginia M Cangelosi; Melissa L Zastrow; Matteo Tegoni; Jefferson S Plegaria; Alison G Tebo; Catherine S Mocny; Leela Ruckthong; Hira Qayyum; Vincent L Pecoraro
Journal:  Chem Rev       Date:  2014-03-24       Impact factor: 60.622

4.  Design of Heteronuclear Metalloenzymes.

Authors:  A Bhagi-Damodaran; P Hosseinzadeh; E Mirts; J Reed; I D Petrik; Y Lu
Journal:  Methods Enzymol       Date:  2016-07-26       Impact factor: 1.600

5.  Kinetic and crystallographic studies of a redesigned manganese-binding site in cytochrome c peroxidase.

Authors:  Thomas D Pfister; Amir Y Mirarefi; Alan J Gengenbach; Xuan Zhao; Connor Danstrom; Nicole Conatser; Yi-Gui Gao; Howard Robinson; Charles F Zukoski; Andrew H-J Wang; Yi Lu
Journal:  J Biol Inorg Chem       Date:  2006-10-05       Impact factor: 3.358

6.  Lanthanide-binding helix-turn-helix peptides: solution structure of a designed metallonuclease.

Authors:  Joel T Welch; William R Kearney; Sonya J Franklin
Journal:  Proc Natl Acad Sci U S A       Date:  2003-03-18       Impact factor: 11.205

7.  Introduction and characterization of a functionally linked metal ion binding site at the exposed heme edge of myoglobin.

Authors:  Christie L Hunter; Robert Maurus; Marcia R Mauk; Hung Lee; Emma L Raven; Harry Tong; Nham Nguyen; Michael Smith; Gary D Brayer; A Grant Mauk
Journal:  Proc Natl Acad Sci U S A       Date:  2003-03-18       Impact factor: 11.205

8.  Biosynthesis of artificial microperoxidases by exploiting the secretion and cytochrome c maturation apparatuses of Escherichia coli.

Authors:  Martin Braun; Linda Thöny-Meyer
Journal:  Proc Natl Acad Sci U S A       Date:  2004-08-24       Impact factor: 11.205

9.  Resonance Raman spectroscopy of cytochrome c peroxidase variants that mimic manganese peroxidase.

Authors:  Manliang Feng; Hiroyasu Tachikawa; Xiaotang Wang; Thomas D Pfister; Alan J Gengenbach; Yi Lu
Journal:  J Biol Inorg Chem       Date:  2003-07-09       Impact factor: 3.358

10.  NMR study of manganese(II) binding by a new versatile peroxidase from the white-rot fungus Pleurotus eryngii.

Authors:  Lucia Banci; Susana Camarero; Angel T Martínez; María J Martínez; Marta Pérez-Boada; Roberta Pierattelli; Francisco J Ruiz-Dueñas
Journal:  J Biol Inorg Chem       Date:  2003-07-15       Impact factor: 3.358

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