Literature DB >> 9835612

Quantitative measure of small-subunit rRNA gene sequences of the kingdom korarchaeota

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Abstract

Comparative PCR amplification of small-subunit (SSU) rRNA gene (rDNA) sequences indicates substantial preferential PCR amplification of pJP27 sequences with korarchaeote-specific PCR primers. The coamplification of a modified SSU rDNA sequence can be used as an internal standard to determine the amount of a specific SSU rDNA sequence.

Year:  1998        PMID： 9835612      PMCID： PMC90972     

Source DB:  PubMed          Journal:  Appl Environ Microbiol        ISSN： 0099-2240            Impact factor:   4.792


  16 in total

1.  Methanopyrus kandleri: an archaeal methanogen unrelated to all other known methanogens.

Authors:  S Burggraf; K O Stetter; P Rouviere; C R Woese
Journal:  Syst Appl Microbiol       Date:  1991       Impact factor: 4.022

2.  Differential amplification of rRNA genes by polymerase chain reaction.

Authors:  A L Reysenbach; L J Giver; G S Wickham; N R Pace
Journal:  Appl Environ Microbiol       Date:  1992-10       Impact factor: 4.792

3.  Identifying members of the domain Archaea with rRNA-targeted oligonucleotide probes.

Authors:  S Burggraf; T Mayer; R Amann; S Schadhauser; C R Woese; K O Stetter
Journal:  Appl Environ Microbiol       Date:  1994-09       Impact factor: 4.792

4.  Remarkable archaeal diversity detected in a Yellowstone National Park hot spring environment.

Authors:  S M Barns; R E Fundyga; M W Jeffries; N R Pace
Journal:  Proc Natl Acad Sci U S A       Date:  1994-03-01       Impact factor: 11.205

5.  At the core of the Archaea.

Authors:  W F Doolittle
Journal:  Proc Natl Acad Sci U S A       Date:  1996-08-20       Impact factor: 11.205

6.  Reclassification of the crenarchael orders and families in accordance with 16S rRNA sequence data.

Authors:  S Burggraf; H Huber; K O Stetter
Journal:  Int J Syst Bacteriol       Date:  1997-07

7.  Quantification of genetically tagged cyanobacteria in Baltic Sea sediment by competitive PCR.

Authors:  A Möller; J K Jansson
Journal:  Biotechniques       Date:  1997-03       Impact factor: 1.993

8.  A pivotal Archaea group.

Authors:  S Burggraf; P Heyder; N Eis
Journal:  Nature       Date:  1997-02-27       Impact factor: 49.962

9.  A molecular technique for identification of bacteria using small subunit ribosomal RNA sequences.

Authors:  E Avaniss-Aghajani; K Jones; D Chapman; C Brunk
Journal:  Biotechniques       Date:  1994-07       Impact factor: 1.993

10.  Gene organization and primary structure of a ribosomal RNA operon from Escherichia coli.

Authors:  J Brosius; T J Dull; D D Sleeter; H F Noller
Journal:  J Mol Biol       Date:  1981-05-15       Impact factor: 5.469
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  13 in total

1.  Rapid detection and quantification of members of the archaeal community by quantitative PCR using fluorogenic probes.

Authors:  K Takai; K Horikoshi
Journal:  Appl Environ Microbiol       Date:  2000-11       Impact factor: 4.792

2.  Evaluation of PCR amplification bias by terminal restriction fragment length polymorphism analysis of small-subunit rRNA and mcrA genes by using defined template mixtures of methanogenic pure cultures and soil DNA extracts.

Authors:  Tillmann Lueders; Michael W Friedrich
Journal:  Appl Environ Microbiol       Date:  2003-01       Impact factor: 4.792

3.  De novo metagenomic assembly reveals abundant novel major lineage of Archaea in hypersaline microbial communities.

Authors:  Priya Narasingarao; Sheila Podell; Juan A Ugalde; Céline Brochier-Armanet; Joanne B Emerson; Jochen J Brocks; Karla B Heidelberg; Jillian F Banfield; Eric E Allen
Journal:  ISME J       Date:  2011-06-30       Impact factor: 10.302

4.  The comparison of microbial communities in thyroid tissues from thyroid carcinoma patients.

Authors:  Chen-Jian Liu; Si-Qian Chen; Si-Yao Zhang; Jia-Lun Wang; Xiao-Dan Tang; Kun-Xian Yang; Xiao-Ran Li
Journal:  J Microbiol       Date:  2021-10-06       Impact factor: 3.422

5.  Combined use of cultivation-dependent and cultivation-independent methods indicates that members of most haloarchaeal groups in an Australian crystallizer pond are cultivable.

Authors:  D G Burns; H M Camakaris; P H Janssen; M L Dyall-Smith
Journal:  Appl Environ Microbiol       Date:  2004-09       Impact factor: 4.792

6.  Coverage evaluation of universal bacterial primers using the metagenomic datasets.

Authors:  Dan-Ping Mao; Quan Zhou; Chong-Yu Chen; Zhe-Xue Quan
Journal:  BMC Microbiol       Date:  2012-05-03       Impact factor: 3.605

7.  The endotracheal tube microbiome associated with Pseudomonas aeruginosa or Staphylococcus epidermidis.

Authors:  An Hotterbeekx; Basil B Xavier; Kenny Bielen; Christine Lammens; Pieter Moons; Tom Schepens; Margareta Ieven; Philippe G Jorens; Herman Goossens; Samir Kumar-Singh; Surbhi Malhotra-Kumar
Journal:  Sci Rep       Date:  2016-11-04       Impact factor: 4.379

8.  An efficient strategy using k-mers to analyse 16S rRNA sequences.

Authors:  Marcel Martínez-Porchas; Francisco Vargas-Albores
Journal:  Heliyon       Date:  2017-07-27

9.  How conserved are the conserved 16S-rRNA regions?

Authors:  Marcel Martinez-Porchas; Enrique Villalpando-Canchola; Luis Enrique Ortiz Suarez; Francisco Vargas-Albores
Journal:  PeerJ       Date:  2017-02-28       Impact factor: 2.984

10.  Archaea on human skin.

Authors:  Alexander J Probst; Anna K Auerbach; Christine Moissl-Eichinger
Journal:  PLoS One       Date:  2013-06-12       Impact factor: 3.240
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