Literature DB >> 9792096

Crystal structure of spinach plastocyanin at 1.7 A resolution.

Y Xue1, M Okvist, O Hansson, S Young.   

Abstract

The crystal structure of plastocyanin from spinach has been determined using molecular replacement, with the structure of plastocyanin from poplar as a search model. Successful crystallization was facilitated by site-directed mutagenesis in which residue Gly8 was substituted with Asp. The region around residue 8 was believed to be too mobile for the wild-type protein to form crystals despite extensive screening. The current structure represents the oxidized plastocyanin, copper (II), at low pH (approximately 4.4). In contrast to the similarity in the core region as compared to its poplar counterpart, the structure shows some significant differences in loop regions. The most notable is the large shift of the 59-61 loop where the largest shift is 3.0 A for the C(alpha) atom of Glu59. This results in different patterns of electrostatic potential around the acidic patches for the two proteins.

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Year:  1998        PMID: 9792096      PMCID: PMC2143848          DOI: 10.1002/pro.5560071006

Source DB:  PubMed          Journal:  Protein Sci        ISSN: 0961-8368            Impact factor:   6.725


  24 in total

1.  A general method for rapid site-directed mutagenesis using the polymerase chain reaction.

Authors:  O Landt; H P Grunert; U Hahn
Journal:  Gene       Date:  1990-11-30       Impact factor: 3.688

2.  Improved methods for building protein models in electron density maps and the location of errors in these models.

Authors:  T A Jones; J Y Zou; S W Cowan; M Kjeldgaard
Journal:  Acta Crystallogr A       Date:  1991-03-01       Impact factor: 2.290

3.  Effects of codon usage and vector-host combinations on the expression of spinach plastocyanin in Escherichia coli.

Authors:  M Ejdebäck; S Young; A Samuelsson; B G Karlsson
Journal:  Protein Expr Purif       Date:  1997-10       Impact factor: 1.650

4.  Flash-photolysis studies of the electron transfer from genetically modified spinach plastocyanin to photosystem I.

Authors:  M Nordling; K Sigfridsson; S Young; L G Lundberg; O Hansson
Journal:  FEBS Lett       Date:  1991-10-21       Impact factor: 4.124

5.  Protein folding and association: insights from the interfacial and thermodynamic properties of hydrocarbons.

Authors:  A Nicholls; K A Sharp; B Honig
Journal:  Proteins       Date:  1991

6.  Electron transfer between spinach plastocyanin mutants and photosystem 1.

Authors:  K Sigfridsson; S Young; O Hansson
Journal:  Eur J Biochem       Date:  1997-05-01

7.  Modeling of the electrostatic potential field of plastocyanin.

Authors:  S R Durell; J K Labanowski; E L Gross
Journal:  Arch Biochem Biophys       Date:  1990-03       Impact factor: 4.013

8.  Site-directed mutagenetic study on the role of negative patches on silene plastocyanin in the interactions with cytochrome f and photosystem I.

Authors:  B H Lee; T Hibino; T Takabe; P J Weisbeek; T Takabe
Journal:  J Biochem       Date:  1995-06       Impact factor: 3.387

9.  Accuracy and precision in protein structure analysis: restrained least-squares refinement of the structure of poplar plastocyanin at 1.33 A resolution.

Authors:  J M Guss; H D Bartunik; H C Freeman
Journal:  Acta Crystallogr B       Date:  1992-12-01

10.  Electron transfer from plastocyanin to photosystem I.

Authors:  W Haehnel; T Jansen; K Gause; R B Klösgen; B Stahl; D Michl; B Huvermann; M Karas; R G Herrmann
Journal:  EMBO J       Date:  1994-03-01       Impact factor: 11.598

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  15 in total

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Authors:  A Bergkvist; M Ejdebäck; M Ubbink; B G Karlsson
Journal:  Protein Sci       Date:  2001-12       Impact factor: 6.725

2.  Electrostatic analysis and Brownian dynamics simulation of the association of plastocyanin and cytochrome f.

Authors:  F De Rienzo; R R Gabdoulline; M C Menziani; P G De Benedetti; R C Wade
Journal:  Biophys J       Date:  2001-12       Impact factor: 4.033

3.  Theoretical descriptors for the quantitative rationalisation of plastocyanin mutant functional propertiess.

Authors:  F De Rienzo; G H Grant; M C Menziani
Journal:  J Comput Aided Mol Des       Date:  2002-07       Impact factor: 3.686

4.  The parsley plastocyanin-turnip cytochrome f complex: a structurally distorted but kinetically functional acidic patch.

Authors:  Peter B Crowley; David M Hunter; Katsuko Sato; William McFarlane; Christopher Dennison
Journal:  Biochem J       Date:  2004-02-15       Impact factor: 3.857

5.  Reinvestigation of the method used to map the electronic structure of blue copper proteins by NMR relaxation.

Authors:  D Flemming Hansen; Serge I Gorelsky; Ritimukta Sarangi; Keith O Hodgson; Britt Hedman; Hans E M Christensen; Edward I Solomon; Jens J Led
Journal:  J Biol Inorg Chem       Date:  2006-01-24       Impact factor: 3.358

6.  A Brownian Dynamics computational study of the interaction of spinach plastocyanin with turnip cytochrome f: the importance of plastocyanin conformational changes.

Authors:  Elizabeth L Gross
Journal:  Photosynth Res       Date:  2007-10-31       Impact factor: 3.573

7.  Brownian dynamics simulations of the interaction of Chlamydomonas cytochrome f with plastocyanin and cytochrome c6.

Authors:  Elizabeth L Gross; Douglas C Pearson
Journal:  Biophys J       Date:  2003-09       Impact factor: 4.033

Review 8.  Artificial photoactive proteins.

Authors:  Reza Razeghifard
Journal:  Photosynth Res       Date:  2008-10-02       Impact factor: 3.573

9.  pH-dependent structural change of reduced spinach plastocyanin studied by perturbed angular correlation of gamma-rays and dynamic light scattering.

Authors:  Klára Nárcisz Sas; Anna Haldrup; Lars Hemmingsen; Eva Danielsen; Lars Holm Øgendal
Journal:  J Biol Inorg Chem       Date:  2006-03-30       Impact factor: 3.358

10.  Structural basis of efficient electron transport between photosynthetic membrane proteins and plastocyanin in spinach revealed using nuclear magnetic resonance.

Authors:  Takumi Ueda; Naoko Nomoto; Masamichi Koga; Hiroki Ogasa; Yuuta Ogawa; Masahiko Matsumoto; Pavlos Stampoulis; Koji Sode; Hiroaki Terasawa; Ichio Shimada
Journal:  Plant Cell       Date:  2012-10-02       Impact factor: 11.277

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