Literature DB >> 14585099

The parsley plastocyanin-turnip cytochrome f complex: a structurally distorted but kinetically functional acidic patch.

Peter B Crowley1, David M Hunter, Katsuko Sato, William McFarlane, Christopher Dennison.   

Abstract

In general, inter-protein electron transfer proceeds via the formation of transient complexes. The initial stage of the interaction between plastocyanin (PCu) and cytochrome f (cyt f ) from plants is mediated by complementary electrostatics. Given the diffuse nature of its acidic patch, parsley PCu is an atypical example of a plant PCu. The interaction of this PCu with turnip cyt f was investigated by stopped-flow kinetics, NMR spectroscopy and protein-docking simulations. We show that, despite the altered acidic patch, parsley PCu is as efficient as spinach PCu in accepting electrons from cyt f, over the physiological range of ionic strength. At high ionic strength, the rate constant for the reaction of cyt f with parsley PCu is twice that of the spinach protein. This difference in reactivity is attributed to variations in the hydrophobic patch of parsley PCu. The results of NMR studies and protein-docking simulations indicate that parsley PCu and its spinach analogue adopt different orientations in their complexes with cyt f.

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Year:  2004        PMID: 14585099      PMCID: PMC1223930          DOI: 10.1042/BJ20031423

Source DB:  PubMed          Journal:  Biochem J        ISSN: 0264-6021            Impact factor:   3.857


  35 in total

1.  Protein docking using continuum electrostatics and geometric fit.

Authors:  J G Mandell; V A Roberts; M E Pique; V Kotlovyi; J C Mitchell; E Nelson; I Tsigelny; L F Ten Eyck
Journal:  Protein Eng       Date:  2001-02

2.  Kinetics of desolvation-mediated protein-protein binding.

Authors:  C J Camacho; S R Kimura; C DeLisi; S Vajda
Journal:  Biophys J       Date:  2000-03       Impact factor: 4.033

Review 3.  Electrostatic aspects of protein-protein interactions.

Authors:  F B Sheinerman; R Norel; B Honig
Journal:  Curr Opin Struct Biol       Date:  2000-04       Impact factor: 6.809

4.  Dynamic interaction of plastocyanin with the cytochrome bf complex.

Authors:  J Illerhaus; L Altschmied; J Reichert; E Zak; R G Herrmann; W Haehnel
Journal:  J Biol Chem       Date:  2000-06-09       Impact factor: 5.157

5.  Side-chain interactions in the plastocyanin-cytochrome f complex.

Authors:  M Ejdebäck; A Bergkvist; B G Karlsson; M Ubbink
Journal:  Biochemistry       Date:  2000-05-02       Impact factor: 3.162

6.  Effect of pH on the self-exchange reactivity of the plant plastocyanin from parsley.

Authors:  D M Hunter; W McFarlane; A G Sykes; C Dennison
Journal:  Inorg Chem       Date:  2001-01-15       Impact factor: 5.165

7.  DbClustal: rapid and reliable global multiple alignments of protein sequences detected by database searches.

Authors:  J D Thompson; F Plewniak; J Thierry; O Poch
Journal:  Nucleic Acids Res       Date:  2000-08-01       Impact factor: 16.971

8.  Surface interactions in the complex between cytochrome f and the E43Q/D44N and E59K/E60Q plastocyanin double mutants as determined by (1)H-NMR chemical shift analysis.

Authors:  A Bergkvist; M Ejdebäck; M Ubbink; B G Karlsson
Journal:  Protein Sci       Date:  2001-12       Impact factor: 6.725

9.  The atomic structure of protein-protein recognition sites.

Authors:  L Lo Conte; C Chothia; J Janin
Journal:  J Mol Biol       Date:  1999-02-05       Impact factor: 5.469

10.  Hydrophobic interactions in a cyanobacterial plastocyanin-cytochrome f complex.

Authors:  P B Crowley; G Otting; B G Schlarb-Ridley; G W Canters; M Ubbink
Journal:  J Am Chem Soc       Date:  2001-10-31       Impact factor: 15.419

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  9 in total

1.  Complexes of photosynthetic redox proteins studied by NMR.

Authors:  Marcellus Ubbink
Journal:  Photosynth Res       Date:  2004       Impact factor: 3.573

2.  A Brownian Dynamics computational study of the interaction of spinach plastocyanin with turnip cytochrome f: the importance of plastocyanin conformational changes.

Authors:  Elizabeth L Gross
Journal:  Photosynth Res       Date:  2007-10-31       Impact factor: 3.573

Review 3.  New direct dynamic models of protein interactions coupled to photosynthetic electron transport reactions.

Authors:  Galina Yu Riznichenko; Ilya B Kovalenko; Anna M Abaturova; Alexandra N Diakonova; Dmitry M Ustinin; Eugene A Grachev; Andrew B Rubin
Journal:  Biophys Rev       Date:  2010-06-10

Review 4.  Metalloproteins containing cytochrome, iron-sulfur, or copper redox centers.

Authors:  Jing Liu; Saumen Chakraborty; Parisa Hosseinzadeh; Yang Yu; Shiliang Tian; Igor Petrik; Ambika Bhagi; Yi Lu
Journal:  Chem Rev       Date:  2014-04-23       Impact factor: 60.622

5.  A Brownian dynamics study of the interaction of Phormidium cytochrome f with various cyanobacterial plastocyanins.

Authors:  Elizabeth L Gross; Irving Rosenberg
Journal:  Biophys J       Date:  2005-10-07       Impact factor: 4.033

6.  Catalytic Reactions and Energy Conservation in the Cytochrome bc1 and b6f Complexes of Energy-Transducing Membranes.

Authors:  Marcin Sarewicz; Sebastian Pintscher; Rafał Pietras; Arkadiusz Borek; Łukasz Bujnowicz; Guy Hanke; William A Cramer; Giovanni Finazzi; Artur Osyczka
Journal:  Chem Rev       Date:  2021-01-19       Impact factor: 60.622

7.  A Brownian dynamics study of the interactions of the luminal domains of the cytochrome b6f complex with plastocyanin and cytochrome c6: the effects of the Rieske FeS protein on the interactions.

Authors:  Esmael J Haddadian; Elizabeth L Gross
Journal:  Biophys J       Date:  2006-07-14       Impact factor: 4.033

8.  A Brownian dynamics study of the effects of cytochrome f structure and deletion of its small domain in interactions with cytochrome c6 and plastocyanin in Chlamydomonas reinhardtii.

Authors:  Esmael J Haddadian; Elizabeth L Gross
Journal:  Biophys J       Date:  2005-10-20       Impact factor: 4.033

9.  DOT2: Macromolecular docking with improved biophysical models.

Authors:  Victoria A Roberts; Elaine E Thompson; Michael E Pique; Martin S Perez; L F Ten Eyck
Journal:  J Comput Chem       Date:  2013-05-21       Impact factor: 3.376

  9 in total

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