Literature DB >> 9791119

The Saccharomyces cerevisiae GATA factors Dal80p and Deh1p can form homo- and heterodimeric complexes.

V V Svetlov1, T G Cooper.   

Abstract

GATA family proteins Gln3p, Gat1p, Dal80p, and Deh1p mediate the regulation of nitrogen catabolite repression (NCR)-sensitive gene expression in Saccharomyces cerevisiae. Thus far, Gln3p, Dal80p, and Deh1p have been shown to bind to GATA sequences in NCR-sensitive promoters, in some cases to exactly the same GATA sequences. A minimal Gln3p binding site consists of a single GATA sequence, whereas a Dal80p binding site consists of two GATA sequences in specific orientation, 15 to 35 bp apart, suggesting that Dal80p may bind to DNA as a dimer. Additionally, both Dal80p and Deh1p are predicted to contain a leucine zipper motif near their C termini. Therefore, we tested whether they could form homo- and/or heterodimers in two-hybrid assays. We show that Dal80p-Dal80p, Dal80p-Dal80pLZ (leucine zipper), Dal80pLZ-Dal80pLZ, Dal80p-Deh1pLZ, Dal80pLZ-Deh1pLZ, and Deh1pLZ-Deh1pLZ complexes can form. Dal80p-Dal80p and Dal80pLZ-Dal80pLZ complexes yield 5- to 10-fold stronger signals than the other possible dimers. If Dal80p and Deh1p bind to DNA only after dimerization, then the difference in ability to form complexes could significantly affect their affinity for binding DNA and thus the degree of regulation exerted by each of the two factors.

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Year:  1998        PMID: 9791119      PMCID: PMC107628     

Source DB:  PubMed          Journal:  J Bacteriol        ISSN: 0021-9193            Impact factor:   3.490


  38 in total

1.  Identification of sequences responsible for transcriptional activation of the allantoate permease gene in Saccharomyces cerevisiae.

Authors:  R Rai; F S Genbauffe; R A Sumrada; T G Cooper
Journal:  Mol Cell Biol       Date:  1989-02       Impact factor: 4.272

2.  Positive and negative regulatory elements control the expression of the UGA4 gene coding for the inducible 4-aminobutyric-acid-specific permease in Saccharomyces cerevisiae.

Authors:  S Vissers; B Andre; F Muyldermans; M Grenson
Journal:  Eur J Biochem       Date:  1989-05-01

3.  Sequence requirements for coiled-coils: analysis with lambda repressor-GCN4 leucine zipper fusions.

Authors:  J C Hu; E K O'Shea; P S Kim; R T Sauer
Journal:  Science       Date:  1990-12-07       Impact factor: 47.728

4.  Requirement of upstream activation sequences for nitrogen catabolite repression of the allantoin system genes in Saccharomyces cerevisiae.

Authors:  T G Cooper; R Rai; H S Yoo
Journal:  Mol Cell Biol       Date:  1989-12       Impact factor: 4.272

5.  Structure and transcription of the allantoate permease gene (DAL5) from Saccharomyces cerevisiae.

Authors:  R Rai; F S Genbauffe; T G Cooper
Journal:  J Bacteriol       Date:  1988-01       Impact factor: 3.490

6.  Transcriptional regulation of the DAL5 gene in Saccharomyces cerevisiae.

Authors:  R Rai; F Genbauffe; H Z Lea; T G Cooper
Journal:  J Bacteriol       Date:  1987-08       Impact factor: 3.490

7.  The GLN3 gene product is required for transcriptional activation of allantoin system gene expression in Saccharomyces cerevisiae.

Authors:  T G Cooper; D Ferguson; R Rai; N Bysani
Journal:  J Bacteriol       Date:  1990-02       Impact factor: 3.490

8.  Regulation of glutamine-repressible gene products by the GLN3 function in Saccharomyces cerevisiae.

Authors:  A P Mitchell; B Magasanik
Journal:  Mol Cell Biol       Date:  1984-12       Impact factor: 4.272

9.  Saturation mutagenesis of the UASNTR (GATAA) responsible for nitrogen catabolite repression-sensitive transcriptional activation of the allantoin pathway genes in Saccharomyces cerevisiae.

Authors:  N Bysani; J R Daugherty; T G Cooper
Journal:  J Bacteriol       Date:  1991-08       Impact factor: 3.490

10.  Isolation and characterization of mutants that produce the allantoin-degrading enzymes constitutively in Saccharomyces cerevisiae.

Authors:  G Chisholm; T G Cooper
Journal:  Mol Cell Biol       Date:  1982-09       Impact factor: 4.272

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  11 in total

1.  Gln3p nuclear localization and interaction with Ure2p in Saccharomyces cerevisiae.

Authors:  A A Kulkarni; A T Abul-Hamd; R Rai; H El Berry; T G Cooper
Journal:  J Biol Chem       Date:  2001-06-14       Impact factor: 5.157

Review 2.  Transmitting the signal of excess nitrogen in Saccharomyces cerevisiae from the Tor proteins to the GATA factors: connecting the dots.

Authors:  Terrance G Cooper
Journal:  FEMS Microbiol Rev       Date:  2002-08       Impact factor: 16.408

Review 3.  Recent advances in nitrogen regulation: a comparison between Saccharomyces cerevisiae and filamentous fungi.

Authors:  Koon Ho Wong; Michael J Hynes; Meryl A Davis
Journal:  Eukaryot Cell       Date:  2008-04-25

4.  Heterologous expression implicates a GATA factor in regulation of nitrogen metabolic genes and ion homeostasis in the halotolerant yeast Debaryomyces hansenii.

Authors:  Raúl García-Salcedo; Antonio Casamayor; Amparo Ruiz; Asier González; Catarina Prista; Maria C Loureiro-Dias; José Ramos; Joaquín Ariño
Journal:  Eukaryot Cell       Date:  2006-08

5.  Green fluorescent protein-Dal80p illuminates up to 16 distinct foci that colocalize with and exhibit the same behavior as chromosomal DNA proceeding through the cell cycle of Saccharomyces cerevisiae.

Authors:  M Distler; A Kulkarni; R Rai; T G Cooper
Journal:  J Bacteriol       Date:  2001-08       Impact factor: 3.490

6.  The yeast GATA factor Gat1 occupies a central position in nitrogen catabolite repression-sensitive gene activation.

Authors:  Isabelle Georis; André Feller; Fabienne Vierendeels; Evelyne Dubois
Journal:  Mol Cell Biol       Date:  2009-04-20       Impact factor: 4.272

7.  Nitrogen catabolite repression-sensitive transcription as a readout of Tor pathway regulation: the genetic background, reporter gene and GATA factor assayed determine the outcomes.

Authors:  Isabelle Georis; André Feller; Jennifer J Tate; Terrance G Cooper; Evelyne Dubois
Journal:  Genetics       Date:  2008-12-22       Impact factor: 4.562

Review 8.  Overview of carbon and nitrogen catabolite metabolism in the virulence of human pathogenic fungi.

Authors:  Laure Nicolas Annick Ries; Sarah Beattie; Robert A Cramer; Gustavo H Goldman
Journal:  Mol Microbiol       Date:  2017-12-29       Impact factor: 3.501

9.  Elucidation of Genetic Interactions in the Yeast GATA-Factor Network Using Bayesian Model Selection.

Authors:  Andreas Milias-Argeitis; Ana Paula Oliveira; Luca Gerosa; Laura Falter; Uwe Sauer; John Lygeros
Journal:  PLoS Comput Biol       Date:  2016-03-11       Impact factor: 4.475

10.  Comparative analysis indicates regulatory neofunctionalization of yeast duplicates.

Authors:  Itay Tirosh; Naama Barkai
Journal:  Genome Biol       Date:  2007       Impact factor: 13.583

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