Literature DB >> 9761469

Conversion of a beta-strand to an alpha-helix induced by a single-site mutation observed in the crystal structure of Fis mutant Pro26Ala.

W Z Yang1, T P Ko, L Corselli, R C Johnson, H S Yuan.   

Abstract

The conversion from an alpha-helix to a beta-strand has received extensive attention since this structural change may induce many amyloidogenic proteins to self-assemble into fibrils and cause fatal diseases. Here we report the conversion of a peptide segment from a beta-strand to an alpha-helix by a single-site mutation as observed in the crystal structure of Fis mutant Pro26Ala determined at 2.0 A resolution. Pro26 in Fis occurs at the point where a flexible extended beta-hairpin arm leaves the core structure. Thus it can be classified as a "hinge proline" located at the C-terminal end of the beta2-strand and the N-terminal cap of the A alpha-helix. The replacement of Pro26 to alanine extends the A alpha-helix for two additional turns in one of the dimeric subunits; therefore, the structure of the peptide from residues 22 to 26 is converted from a beta-strand to an alpha-helix. This result confirms the structural importance of the proline residue located at the hinge region and may explain the mutant's reduced ability to activate Hin-catalyzed DNA inversion. The peptide (residues 20 to 26) in the second monomer subunit presumably retains its beta-strand conformation in the crystal; therefore, this peptide shows a "chameleon-like" character since it can adopt either an alpha-helix or a beta-strand structure in different environments. The structure of Pro26Ala provides an additional example where not only the protein sequence, but also non-local interactions determine the secondary structure of proteins.

Entities:  

Mesh:

Substances:

Year:  1998        PMID: 9761469      PMCID: PMC2144158          DOI: 10.1002/pro.5560070904

Source DB:  PubMed          Journal:  Protein Sci        ISSN: 0961-8368            Impact factor:   6.725


  30 in total

1.  A thermodynamic scale for the helix-forming tendencies of the commonly occurring amino acids.

Authors:  K T O'Neil; W F DeGrado
Journal:  Science       Date:  1990-11-02       Impact factor: 47.728

2.  The N-terminal part of the E.coli DNA binding protein FIS is essential for stimulating site-specific DNA inversion but is not required for specific DNA binding.

Authors:  C Koch; O Ninnemann; H Fuss; R Kahmann
Journal:  Nucleic Acids Res       Date:  1991-11-11       Impact factor: 16.971

3.  The molecular structure of wild-type and a mutant Fis protein: relationship between mutational changes and recombinational enhancer function or DNA binding.

Authors:  H S Yuan; S E Finkel; J A Feng; M Kaczor-Grzeskowiak; R C Johnson; R E Dickerson
Journal:  Proc Natl Acad Sci U S A       Date:  1991-11-01       Impact factor: 11.205

4.  Three-dimensional structure of the E. coli DNA-binding protein FIS.

Authors:  D Kostrewa; J Granzin; C Koch; H W Choe; S Raghunathan; W Wolf; J Labahn; R Kahmann; W Saenger
Journal:  Nature       Date:  1991-01-10       Impact factor: 49.962

5.  The Hin invertasome: protein-mediated joining of distant recombination sites at the enhancer.

Authors:  K A Heichman; R C Johnson
Journal:  Science       Date:  1990-08-03       Impact factor: 47.728

6.  Amino acid preferences for specific locations at the ends of alpha helices.

Authors:  J S Richardson; D C Richardson
Journal:  Science       Date:  1988-06-17       Impact factor: 47.728

7.  Host protein requirements for in vitro site-specific DNA inversion.

Authors:  R C Johnson; M F Bruist; M I Simon
Journal:  Cell       Date:  1986-08-15       Impact factor: 41.582

8.  Crystal structure of the factor for inversion stimulation FIS at 2.0 A resolution.

Authors:  D Kostrewa; J Granzin; D Stock; H W Choe; J Labahn; W Saenger
Journal:  J Mol Biol       Date:  1992-07-05       Impact factor: 5.469

9.  Quantitative determination of helical propensities from trifluoroethanol titration curves.

Authors:  A Jasanoff; A R Fersht
Journal:  Biochemistry       Date:  1994-03-01       Impact factor: 3.162

10.  Identification of two functional regions in Fis: the N-terminus is required to promote Hin-mediated DNA inversion but not lambda excision.

Authors:  R Osuna; S E Finkel; R C Johnson
Journal:  EMBO J       Date:  1991-06       Impact factor: 11.598

View more
  13 in total

1.  A novel type of conserved DNA-binding domain in the transcriptional regulators of the AlgR/AgrA/LytR family.

Authors:  Anastasia N Nikolskaya; Michael Y Galperin
Journal:  Nucleic Acids Res       Date:  2002-06-01       Impact factor: 16.971

2.  Free-energy landscape of a chameleon sequence in explicit water and its inherent alpha/beta bifacial property.

Authors:  Kazuyoshi Ikeda; Junichi Higo
Journal:  Protein Sci       Date:  2003-11       Impact factor: 6.725

3.  Sequence composition and environment effects on residue fluctuations in protein structures.

Authors:  Anatoly M Ruvinsky; Ilya A Vakser
Journal:  J Chem Phys       Date:  2010-10-21       Impact factor: 3.488

4.  Structural basis for converting a general transcription factor into an operon-specific virulence regulator.

Authors:  Georgiy A Belogurov; Marina N Vassylyeva; Vladimir Svetlov; Sergiy Klyuyev; Nick V Grishin; Dmitry G Vassylyev; Irina Artsimovitch
Journal:  Mol Cell       Date:  2007-04-13       Impact factor: 17.970

5.  A folding space odyssey.

Authors:  Alan R Davidson
Journal:  Proc Natl Acad Sci U S A       Date:  2008-02-19       Impact factor: 11.205

Review 6.  Chemical cross-linking in the structural analysis of protein assemblies.

Authors:  Feixia Chu; Daniel T Thornton; Hieu T Nguyen
Journal:  Methods       Date:  2018-05-30       Impact factor: 3.608

7.  Replica exchange molecular dynamics simulation of structure variation from α/4β-fold to 3α-fold protein.

Authors:  Raudah Lazim; Ye Mei; Dawei Zhang
Journal:  J Mol Model       Date:  2011-06-14       Impact factor: 1.810

8.  Statistical analysis and molecular dynamics simulations of ambivalent α-helices.

Authors:  Nicholus Bhattacharjee; Parbati Biswas
Journal:  BMC Bioinformatics       Date:  2010-10-18       Impact factor: 3.169

9.  Aggregation of Chameleon Peptides: Implications of α-Helicity in Fibril Formation.

Authors:  Bongkeun Kim; Thanh D Do; Eric Y Hayden; David B Teplow; Michael T Bowers; Joan-Emma Shea
Journal:  J Phys Chem B       Date:  2016-04-01       Impact factor: 2.991

10.  Helical ambivalency induced by point mutations.

Authors:  Nicholus Bhattacharjee; Parbati Biswas
Journal:  BMC Struct Biol       Date:  2013-05-15
View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.