Literature DB >> 9759492

RNA localization in development.

A Bashirullah1, R L Cooperstock, H D Lipshitz.   

Abstract

Cytoplasmic RNA localization is an evolutionarily ancient mechanism for producing cellular asymmetries. This review considers RNA localization in the context of animal development. Both mRNAs and non-protein-coding RNAs are localized in Drosophila, Xenopus, ascidian, zebrafish, and echinoderm oocytes and embryos, as well as in a variety of developing and differentiated polarized cells from yeast to mammals. Mechanisms used to transport and anchor RNAs in the cytoplasm include vectorial transport out of the nucleus, directed cytoplasmic transport in association with the cytoskeleton, and local entrapment at particular cytoplasmic sites. The majority of localized RNAs are targeted to particular cytoplasmic regions by cis-acting RNA elements; in mRNAs these are almost always in the 3'-untranslated region (UTR). A variety of trans-acting factors--many of them RNA-binding proteins--function in localization. Developmental functions of RNA localization have been defined in Xenopus, Drosophila, and Saccharomyces cerevisiae. In Drosophila, localized RNAs program the antero-posterior and dorso-ventral axes of the oocyte and embryo. In Xenopus, localized RNAs may function in mesoderm induction as well as in dorso-ventral axis specification. Localized RNAs also program asymmetric cell fates during Drosophila neurogenesis and yeast budding.

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Year:  1998        PMID: 9759492     DOI: 10.1146/annurev.biochem.67.1.335

Source DB:  PubMed          Journal:  Annu Rev Biochem        ISSN: 0066-4154            Impact factor:   23.643


  93 in total

1.  StreptoTag: a novel method for the isolation of RNA-binding proteins.

Authors:  M Bachler; R Schroeder; U von Ahsen
Journal:  RNA       Date:  1999-11       Impact factor: 4.942

2.  UTRdb and UTRsite: specialized databases of sequences and functional elements of 5' and 3' untranslated regions of eukaryotic mRNAs.

Authors:  G Pesole; S Liuni; G Grillo; F Licciulli; A Larizza; W Makalowski; C Saccone
Journal:  Nucleic Acids Res       Date:  2000-01-01       Impact factor: 16.971

3.  The Drosophila wispy gene is required for RNA localization and other microtubule-based events of meiosis and early embryogenesis.

Authors:  A E Brent; A MacQueen; T Hazelrigg
Journal:  Genetics       Date:  2000-04       Impact factor: 4.562

4.  Distinct roles of two conserved Staufen domains in oskar mRNA localization and translation.

Authors:  D R Micklem; J Adams; S Grünert; D St Johnston
Journal:  EMBO J       Date:  2000-03-15       Impact factor: 11.598

5.  Subcellular localization of expansin mRNA in xylem cells.

Authors:  K H Im; D J Cosgrove; A M Jones
Journal:  Plant Physiol       Date:  2000-06       Impact factor: 8.340

6.  Joint action of two RNA degradation pathways controls the timing of maternal transcript elimination at the midblastula transition in Drosophila melanogaster.

Authors:  A Bashirullah; S R Halsell; R L Cooperstock; M Kloc; A Karaiskakis; W W Fisher; W Fu; J K Hamilton; L D Etkin; H D Lipshitz
Journal:  EMBO J       Date:  1999-05-04       Impact factor: 11.598

7.  Coordinate control of translation and localization of Vg1 mRNA in Xenopus oocytes.

Authors:  J E Wilhelm; R D Vale; R S Hegde
Journal:  Proc Natl Acad Sci U S A       Date:  2000-11-21       Impact factor: 11.205

Review 8.  Spatial and temporal control of RNA stability.

Authors:  A Bashirullah; R L Cooperstock; H D Lipshitz
Journal:  Proc Natl Acad Sci U S A       Date:  2001-06-19       Impact factor: 11.205

9.  UTRdb and UTRsite: specialized databases of sequences and functional elements of 5' and 3' untranslated regions of eukaryotic mRNAs. Update 2002.

Authors:  Graziano Pesole; Sabino Liuni; Giorgio Grillo; Flavio Licciulli; Flavio Mignone; Carmela Gissi; Cecilia Saccone
Journal:  Nucleic Acids Res       Date:  2002-01-01       Impact factor: 16.971

10.  Assembly of the ribonucleoprotein complex containing the mRNA of the beta-subunit of the mitochondrial H+-ATP synthase requires the participation of two distal cis-acting elements and a complex set of cellular trans-acting proteins.

Authors:  Javier Ricart; José M Izquierdo; Carlo M Di Liegro; José M Cuezva
Journal:  Biochem J       Date:  2002-07-15       Impact factor: 3.857

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