Literature DB >> 9740716

Chromatin structure and analysis of mechanisms of activators and repressors.

R T Simpson1.   

Abstract

Some transcriptional repressors appear to organize chromatin structure as at least part of their mechanism. Some transcriptional activators appear to alter or remodel chromatin structure as at least part of their mechanism. Understanding transcriptional regulation thus requires methods for investigation of the chromatin structure of specific genes in different states of functional activity. This paper reviews chemical and enzymatic approaches to determination of chromatin structure, the methods used for analysis of the results, and criteria for interpretation of the data to infer chromatin structures.

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Year:  1998        PMID: 9740716     DOI: 10.1006/meth.1998.0632

Source DB:  PubMed          Journal:  Methods        ISSN: 1046-2023            Impact factor:   3.608


  10 in total

1.  Targeted histone acetylation and altered nuclease accessibility over short regions of the pea plastocyanin gene.

Authors:  Y L Chua; A P Brown; J C Gray
Journal:  Plant Cell       Date:  2001-03       Impact factor: 11.277

2.  Chromatin structure mapping in Saccharomyces cerevisiae in vivo with DNase I.

Authors:  X Wang; R T Simpson
Journal:  Nucleic Acids Res       Date:  2001-05-01       Impact factor: 16.971

3.  Nucleosome-positioning sequence repeats impact chromatin silencing in yeast minichromosomes.

Authors:  Sangita A Chakraborty; Abid A Kazi; Tamreen M Khan; Sergei A Grigoryev
Journal:  Genetics       Date:  2014-09-03       Impact factor: 4.562

4.  High-resolution structural analysis of chromatin at specific loci: Saccharomyces cerevisiae silent mating-type locus HMRa.

Authors:  A Ravindra; K Weiss; R T Simpson
Journal:  Mol Cell Biol       Date:  1999-12       Impact factor: 4.272

5.  Suppression of the GLUT4 adaptive response to exercise in fructose-fed rats.

Authors:  Veeraj Goyaram; Tertius A Kohn; Edward O Ojuka
Journal:  Am J Physiol Endocrinol Metab       Date:  2013-12-10       Impact factor: 4.310

Review 6.  Single-molecule analysis of chromatin: changing the view of genomes one molecule at a time.

Authors:  Santhi Pondugula; Michael P Kladde
Journal:  J Cell Biochem       Date:  2008-10-01       Impact factor: 4.429

7.  The ubiquitin-dependent targeting pathway in Saccharomyces cerevisiae plays a critical role in multiple chromatin assembly regulatory steps.

Authors:  Troy A A Harkness; Gerald F Davies; Vijay Ramaswamy; Terra G Arnason
Journal:  Genetics       Date:  2002-10       Impact factor: 4.562

8.  Histone acetylation and chromatin remodeling are required for UV-B-dependent transcriptional activation of regulated genes in maize.

Authors:  Paula Casati; Mabel Campi; Feixia Chu; Nagi Suzuki; David Maltby; Shenheng Guan; Alma L Burlingame; Virginia Walbot
Journal:  Plant Cell       Date:  2008-04-08       Impact factor: 11.277

9.  Binding of lac repressor-GFP fusion protein to lac operator sites inserted in the tobacco chloroplast genome examined by chromatin immunoprecipitation.

Authors:  Christine A Newell; John C Gray
Journal:  Nucleic Acids Res       Date:  2010-05-19       Impact factor: 16.971

10.  Chromatin modification contributes to the expression divergence of three TaGS2 homoeologs in hexaploid wheat.

Authors:  Wei Zhang; Xiaoli Fan; Yingjie Gao; Lei Liu; Lijing Sun; Qiannan Su; Jie Han; Na Zhang; Fa Cui; Jun Ji; Yiping Tong; Junming Li
Journal:  Sci Rep       Date:  2017-03-16       Impact factor: 4.379

  10 in total

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