Literature DB >> 9731771

Engineering an intertwined form of CD2 for stability and assembly.

A J Murray1, J G Head, J J Barker, R L Brady.   

Abstract

The amino-terminal domain of CD2 has the remarkable ability to fold in two ways: either as a monomer or as an intertwined, metastable dimer. Here we show that it is possible to differentially stabilize either fold by engineering the CD2 sequence, mimicking random mutagenesis events that could occur during molecular evolution. Crystal structures of a hinge-deletion mutant, which is stable as an intertwined dimer, reveal domain rotations that enable the protein to further assemble to a tetramer. These results demonstrate that a variety of folds can be adopted by a single polypeptide sequence, and provide guidance for the design of proteins capable of further assembly.

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Year:  1998        PMID: 9731771     DOI: 10.1038/1816

Source DB:  PubMed          Journal:  Nat Struct Biol        ISSN: 1072-8368


  25 in total

Review 1.  The micro-mechanics of single molecules studied with atomic force microscopy.

Authors:  T E Fisher; P E Marszalek; A F Oberhauser; M Carrion-Vazquez; J M Fernandez
Journal:  J Physiol       Date:  1999-10-01       Impact factor: 5.182

2.  Three-dimensional domain swapping in p13suc1 occurs in the unfolded state and is controlled by conserved proline residues.

Authors:  F Rousseau; J W Schymkowitz; H R Wilkinson; L S Itzhaki
Journal:  Proc Natl Acad Sci U S A       Date:  2001-05-08       Impact factor: 11.205

3.  An improved hydrogen bond potential: impact on medium resolution protein structures.

Authors:  Felcy Fabiola; Richard Bertram; Andrei Korostelev; Michael S Chapman
Journal:  Protein Sci       Date:  2002-06       Impact factor: 6.725

4.  Metamorphic proteins mediate evolutionary transitions of structure.

Authors:  Itamar Yadid; Noam Kirshenbaum; Michal Sharon; Orly Dym; Dan S Tawfik
Journal:  Proc Natl Acad Sci U S A       Date:  2010-04-05       Impact factor: 11.205

5.  Open interface and large quaternary structure movements in 3D domain swapped proteins: insights from molecular dynamics simulations of the C-terminal swapped dimer of ribonuclease A.

Authors:  Antonello Merlino; Marc Antoine Ceruso; Luigi Vitagliano; Lelio Mazzarella
Journal:  Biophys J       Date:  2004-12-13       Impact factor: 4.033

6.  Sequence and structural determinants of strand swapping in cadherin domains: do all cadherins bind through the same adhesive interface?

Authors:  Shoshana Posy; Lawrence Shapiro; Barry Honig
Journal:  J Mol Biol       Date:  2008-03-04       Impact factor: 5.469

7.  Two independently folding units of Plasmodium profilin suggest evolution via gene fusion.

Authors:  Saligram Prabhakar Bhargav; Juha Vahokoski; Juha Pekka Kallio; Andrew E Torda; Petri Kursula; Inari Kursula
Journal:  Cell Mol Life Sci       Date:  2015-05-27       Impact factor: 9.261

8.  Amino-acid composition after loop deletion drives domain swapping.

Authors:  Neha Nandwani; Parag Surana; Jayant B Udgaonkar; Ranabir Das; Shachi Gosavi
Journal:  Protein Sci       Date:  2017-08-30       Impact factor: 6.725

9.  Engineered Domain Swapping as an On/Off Switch for Protein Function.

Authors:  Jeung-Hoi Ha; Joshua M Karchin; Nancy Walker-Kopp; Carlos A Castañeda; Stewart N Loh
Journal:  Chem Biol       Date:  2015-10-22

10.  Insights into Protein Sequence and Structure-Derived Features Mediating 3D Domain Swapping Mechanism using Support Vector Machine Based Approach.

Authors:  Khader Shameer; Ganesan Pugalenthi; Krishna Kumar Kandaswamy; Ponnuthurai N Suganthan; Govindaraju Archunan; Ramanathan Sowdhamini
Journal:  Bioinform Biol Insights       Date:  2010-06-17
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