Literature DB >> 9721095

Response of flexible polymers to a sudden elongational flow

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Abstract

Individual polymers at thermal equilibrium were exposed to an elongational flow producing a high strain rate, and their dynamics were recorded with video fluorescence microscopy. The flow was turned on suddenly so that the entire evolution of molecular conformation could be observed without initial perturbations. The rate of stretching of individual molecules is highly variable and depends on the molecular conformation that develops during stretching. This variability is due to a dependence of the dynamics on the initial, random equilibrium conformation of the polymer coil. The increasing appearance at high strain rates of slowly unraveling hairpin folds is an example of nonergodic dynamics, which can occur when a statistical mechanical system is subjected to nonadiabatic, or "sudden," external forces.

Entities:  

Year:  1998        PMID: 9721095     DOI: 10.1126/science.281.5381.1335

Source DB:  PubMed          Journal:  Science        ISSN: 0036-8075            Impact factor:   47.728


  28 in total

1.  Ligand-induced conformational changes observed in single RNA molecules.

Authors:  T Ha; X Zhuang; H D Kim; J W Orr; J R Williamson; S Chu
Journal:  Proc Natl Acad Sci U S A       Date:  1999-08-03       Impact factor: 11.205

2.  An integrated laser trap/flow control video microscope for the study of single biomolecules.

Authors:  G J Wuite; R J Davenport; A Rappaport; C Bustamante
Journal:  Biophys J       Date:  2000-08       Impact factor: 4.033

3.  Tuning DNA "strings": modulating the rate of DNA replication with mechanical tension.

Authors:  A Goel; M D Frank-Kamenetskii; T Ellenberger; D Herschbach
Journal:  Proc Natl Acad Sci U S A       Date:  2001-07-10       Impact factor: 11.205

4.  Peptide nucleic acids as tools for single-molecule sequence detection and manipulation.

Authors:  Hagar Zohar; Craig L Hetherington; Carlos Bustamante; Susan J Muller
Journal:  Nano Lett       Date:  2010-11-10       Impact factor: 11.189

5.  Electrokinetic stretching of tethered DNA.

Authors:  Sean Ferree; Harvey W Blanch
Journal:  Biophys J       Date:  2003-10       Impact factor: 4.033

6.  Conformational fluctuations of a tethered polymer in uniform flow.

Authors:  R Rzehak
Journal:  Eur Phys J E Soft Matter       Date:  2003-08       Impact factor: 1.890

7.  Exploring both sequence detection and restriction endonuclease cleavage kinetics by recognition site via single-molecule microfluidic trapping.

Authors:  Weilin Xu; Susan J Muller
Journal:  Lab Chip       Date:  2010-11-12       Impact factor: 6.799

8.  Determining hydrodynamic forces in bursting bubbles using DNA nanotube mechanics.

Authors:  Rizal F Hariadi; Erik Winfree; Bernard Yurke
Journal:  Proc Natl Acad Sci U S A       Date:  2015-10-26       Impact factor: 11.205

9.  Three-dimensional structures and symmetry breaking in viscoelastic cross-channel flow.

Authors:  Boyang Qin; Ranjiangshang Ran; Paul F Salipante; Steven D Hudson; Paulo E Arratia
Journal:  Soft Matter       Date:  2020-06-11       Impact factor: 3.679

10.  DNA relaxation dynamics as a probe for the intracellular environment.

Authors:  J K Fisher; M Ballenger; E T O'Brien; J Haase; R Superfine; K Bloom
Journal:  Proc Natl Acad Sci U S A       Date:  2009-05-28       Impact factor: 11.205

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