Literature DB >> 9720287

Distribution of fitness effects caused by random insertion mutations in Escherichia coli.

S F Elena1, L Ekunwe, N Hajela, S A Oden, R E Lenski.   

Abstract

Very little is known about the distribution of mutational effects on organismal fitness, despite the fundamental importance of this information for the study of evolution. This lack of information reflects the fact that it is generally difficult to quantify the dynamic effects of mutation and natural selection using only static distributions of allele frequencies. In this study, we took a direct approach to measuring the effects of mutations on fitness. We used transposon-mutagenesis to create 226 mutant clones of Escherichia coli. Each mutant clone carried a single random insertion of a derivative of Tn10. All 226 mutants were independently derived from the same progenitor clone, which was obtained from a population that had evolved in a constant laboratory environment for 10,000 generations. We then performed competition experiments to measure the effect of each mutation on fitness relative to a common competitor. At least 80% of the mutations had a significant negative effect on fitness, whereas none of the mutations had a significant positive effect. The mutations reduced fitness by about 3%, on average, but the distribution of fitness effects was highly skewed and had a long, flat tail. A compound distribution, which includes both gamma and uniform components, provided an excellent fit to the observed fitness values.

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Year:  1998        PMID: 9720287

Source DB:  PubMed          Journal:  Genetica        ISSN: 0016-6707            Impact factor:   1.082


  66 in total

1.  Pervasive compensatory adaptation in Escherichia coli.

Authors:  F B Moore; D E Rozen; R E Lenski
Journal:  Proc Biol Sci       Date:  2000-03-07       Impact factor: 5.349

2.  The approach to mutation-selection balance in an infinite asexual population, and the evolution of mutation rates.

Authors:  T Johnson
Journal:  Proc Biol Sci       Date:  1999-12-07       Impact factor: 5.349

3.  Contribution of individual random mutations to genotype-by-environment interactions in Escherichia coli.

Authors:  S K Remold; R E Lenski
Journal:  Proc Natl Acad Sci U S A       Date:  2001-09-25       Impact factor: 11.205

4.  The distribution of fitness effects caused by single-nucleotide substitutions in an RNA virus.

Authors:  Rafael Sanjuán; Andrés Moya; Santiago F Elena
Journal:  Proc Natl Acad Sci U S A       Date:  2004-05-24       Impact factor: 11.205

5.  Measuring selection coefficients below 10(-3): method, questions, and prospects.

Authors:  Romain Gallet; Tim F Cooper; Santiago F Elena; Thomas Lenormand
Journal:  Genetics       Date:  2011-10-31       Impact factor: 4.562

Review 6.  Mutational fitness effects in RNA and single-stranded DNA viruses: common patterns revealed by site-directed mutagenesis studies.

Authors:  Rafael Sanjuán
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2010-06-27       Impact factor: 6.237

Review 7.  Thoughts Toward a Theory of Natural Selection: The Importance of Microbial Experimental Evolution.

Authors:  Daniel Dykhuizen
Journal:  Cold Spring Harb Perspect Biol       Date:  2016-01-08       Impact factor: 10.005

8.  Parasites and mutational load: an experimental test of a pluralistic theory for the evolution of sex.

Authors:  Tim F Cooper; Richard E Lenski; Santiago F Elena
Journal:  Proc Biol Sci       Date:  2005-02-07       Impact factor: 5.349

9.  Effects of random mutations in the human immunodeficiency virus type 1 transcriptional promoter on viral fitness in different host cell environments.

Authors:  Tim van Opijnen; Maarten C Boerlijst; Ben Berkhout
Journal:  J Virol       Date:  2006-07       Impact factor: 5.103

10.  Experimental estimate of the abundance and effects of nearly neutral mutations in the RNA virus phi 6.

Authors:  Christina L Burch; Sebastien Guyader; Daniel Samarov; Haipeng Shen
Journal:  Genetics       Date:  2007-03-04       Impact factor: 4.562

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