Literature DB >> 9720117

The platypus is not a rodent: DNA hybridization, amniote phylogeny and the palimpsest theory.

J A Kirsch1, G C Mayer.   

Abstract

We present DNA-hybridization data on 21 amniotes and two anurans showing that discrimination is obtained among most of these at the class and lower levels. Trees generated from these data largely agree with conventional views, for example in not associating birds and mammals. However, the sister relationships found here of the monotremes to marsupials, and of turtles to the alligator, are surprising results which are nonetheless consistent with the results of some other studies. The Marsupionta hypothesis of Gregory is reviewed, as are opinions about the placement of chelonians. Anatomical and reproductive data considered by Gregory do not unequivocally preclude a marsupial-monotreme special relationship, and there is other recent evidence for placing turtles within the Diapsida. We conclude that the evidential meaning of the molecular data is as shown in the trees, but that the topologies may be influenced by a base-compositional bias producing a seemingly slow evolutionary rate in monotremes, or by algorithmic artefacts (in the case of turtles as well).

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Year:  1998        PMID: 9720117      PMCID: PMC1692306          DOI: 10.1098/rstb.1998.0278

Source DB:  PubMed          Journal:  Philos Trans R Soc Lond B Biol Sci        ISSN: 0962-8436            Impact factor:   6.237


  32 in total

1.  Base-compositional biases and the bat problem. II. DNA-hybridization trees based on AT- and GC-enriched tracers.

Authors:  J A Kirsch; J D Pettigrew
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  1998-03-29       Impact factor: 6.237

2.  Base-compositional biases and the bat problem. I. DNA-hybridization melting curves based on AT- and GC-enriched tracers.

Authors:  J D Pettigrew; A W Kirsch
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  1998-03-29       Impact factor: 6.237

3.  Phylogenetic analyses of mitochondrial DNA suggest a sister group relationship between Xenarthra (Edentata) and Ferungulates.

Authors:  U Arnason; A Gullberg; A Janke
Journal:  Mol Biol Evol       Date:  1997-07       Impact factor: 16.240

4.  Indexes to the reassociation and stability of solution DNA hybrids.

Authors:  F H Sheldon; A H Bledsoe
Journal:  J Mol Evol       Date:  1989-10       Impact factor: 2.395

5.  The isochore patterns of mammalian genomes and their phylogenetic implications.

Authors:  G Sabeur; G Macaya; F Kadi; G Bernardi
Journal:  J Mol Evol       Date:  1993-08       Impact factor: 2.395

6.  Taxonomic congruence versus total evidence, and amniote phylogeny inferred from fossils, molecules, and morphology.

Authors:  D J Eernisse; A G Kluge
Journal:  Mol Biol Evol       Date:  1993-11       Impact factor: 16.240

7.  Molecular evidence for the origin of birds.

Authors:  S B Hedges
Journal:  Proc Natl Acad Sci U S A       Date:  1994-03-29       Impact factor: 11.205

8.  Molecular phylogeny of Dictyostelium discoideum by protein sequence comparison.

Authors:  W F Loomis; D W Smith
Journal:  Proc Natl Acad Sci U S A       Date:  1990-12       Impact factor: 11.205

9.  The complete mitochondrial genome of Alligator mississippiensis and the separation between recent archosauria (birds and crocodiles).

Authors:  A Janke; U Arnason
Journal:  Mol Biol Evol       Date:  1997-12       Impact factor: 16.240

10.  Eutherian-like reproductive specializations in a viviparous reptile.

Authors:  D G Blackburn; L J Vitt; C A Beuchat
Journal:  Proc Natl Acad Sci U S A       Date:  1984-08       Impact factor: 11.205

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  11 in total

1.  Analysis of a marsupial MHC region containing two recently duplicated class I loci.

Authors:  Katarzyna B Miska; April M Wright; Rachel Lundgren; Robert Sasaki-McClees; Amy Osterman; James M Gale; Robert D Miller
Journal:  Mamm Genome       Date:  2004-10       Impact factor: 2.957

2.  The oldest platypus and its bearing on divergence timing of the platypus and echidna clades.

Authors:  Timothy Rowe; Thomas H Rich; Patricia Vickers-Rich; Mark Springer; Michael O Woodburne
Journal:  Proc Natl Acad Sci U S A       Date:  2008-01-23       Impact factor: 11.205

Review 3.  How did the platypus get its sex chromosome chain? A comparison of meiotic multiples and sex chromosomes in plants and animals.

Authors:  Frank Gruetzner; Terry Ashley; David M Rowell; Jennifer A Marshall Graves
Journal:  Chromosoma       Date:  2005-12-13       Impact factor: 4.316

4.  Phylogenomic analyses support the position of turtles as the sister group of birds and crocodiles (Archosauria).

Authors:  Ylenia Chiari; Vincent Cahais; Nicolas Galtier; Frédéric Delsuc
Journal:  BMC Biol       Date:  2012-07-27       Impact factor: 7.431

5.  Molecules, morphology, and ecology indicate a recent, amphibious ancestry for echidnas.

Authors:  Matthew J Phillips; Thomas H Bennett; Michael S Y Lee
Journal:  Proc Natl Acad Sci U S A       Date:  2009-09-23       Impact factor: 11.205

6.  The distribution and morphological characteristics of cholinergic cells in the brain of monotremes as revealed by ChAT immunohistochemistry.

Authors:  P R Manger; H M Fahringer; J D Pettigrew; J M Siegel
Journal:  Brain Behav Evol       Date:  2002       Impact factor: 1.808

7.  The distribution and morphological characteristics of serotonergic cells in the brain of monotremes.

Authors:  P R Manger; H M Fahringer; J D Pettigrew; J M Siegel
Journal:  Brain Behav Evol       Date:  2002       Impact factor: 1.808

8.  Reptilian-transcriptome v1.0, a glimpse in the brain transcriptome of five divergent Sauropsida lineages and the phylogenetic position of turtles.

Authors:  Athanasia C Tzika; Raphaël Helaers; Gerrit Schramm; Michel C Milinkovitch
Journal:  Evodevo       Date:  2011-09-26       Impact factor: 2.250

9.  Genome analysis of the platypus reveals unique signatures of evolution.

Authors:  Wesley C Warren; LaDeana W Hillier; Jennifer A Marshall Graves; Ewan Birney; Chris P Ponting; Frank Grützner; Katherine Belov; Webb Miller; Laura Clarke; Asif T Chinwalla; Shiaw-Pyng Yang; Andreas Heger; Devin P Locke; Pat Miethke; Paul D Waters; Frédéric Veyrunes; Lucinda Fulton; Bob Fulton; Tina Graves; John Wallis; Xose S Puente; Carlos López-Otín; Gonzalo R Ordóñez; Evan E Eichler; Lin Chen; Ze Cheng; Janine E Deakin; Amber Alsop; Katherine Thompson; Patrick Kirby; Anthony T Papenfuss; Matthew J Wakefield; Tsviya Olender; Doron Lancet; Gavin A Huttley; Arian F A Smit; Andrew Pask; Peter Temple-Smith; Mark A Batzer; Jerilyn A Walker; Miriam K Konkel; Robert S Harris; Camilla M Whittington; Emily S W Wong; Neil J Gemmell; Emmanuel Buschiazzo; Iris M Vargas Jentzsch; Angelika Merkel; Juergen Schmitz; Anja Zemann; Gennady Churakov; Jan Ole Kriegs; Juergen Brosius; Elizabeth P Murchison; Ravi Sachidanandam; Carly Smith; Gregory J Hannon; Enkhjargal Tsend-Ayush; Daniel McMillan; Rosalind Attenborough; Willem Rens; Malcolm Ferguson-Smith; Christophe M Lefèvre; Julie A Sharp; Kevin R Nicholas; David A Ray; Michael Kube; Richard Reinhardt; Thomas H Pringle; James Taylor; Russell C Jones; Brett Nixon; Jean-Louis Dacheux; Hitoshi Niwa; Yoko Sekita; Xiaoqiu Huang; Alexander Stark; Pouya Kheradpour; Manolis Kellis; Paul Flicek; Yuan Chen; Caleb Webber; Ross Hardison; Joanne Nelson; Kym Hallsworth-Pepin; Kim Delehaunty; Chris Markovic; Pat Minx; Yucheng Feng; Colin Kremitzki; Makedonka Mitreva; Jarret Glasscock; Todd Wylie; Patricia Wohldmann; Prathapan Thiru; Michael N Nhan; Craig S Pohl; Scott M Smith; Shunfeng Hou; Mikhail Nefedov; Pieter J de Jong; Marilyn B Renfree; Elaine R Mardis; Richard K Wilson
Journal:  Nature       Date:  2008-05-08       Impact factor: 49.962

10.  The multiple sex chromosomes of platypus and echidna are not completely identical and several share homology with the avian Z.

Authors:  Willem Rens; Patricia C M O'Brien; Frank Grützner; Oliver Clarke; Daria Graphodatskaya; Enkhjargal Tsend-Ayush; Vladimir A Trifonov; Helen Skelton; Mary C Wallis; Steve Johnston; Frederic Veyrunes; Jennifer A M Graves; Malcolm A Ferguson-Smith
Journal:  Genome Biol       Date:  2007       Impact factor: 13.583

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