Literature DB >> 9695191

Pooled testing for HIV prevalence estimation: exploiting the dilution effect.

S A Zenios1, L M Wein.   

Abstract

We study pooled (or group) testing as a method for estimating the prevalence of HIV; rather than testing each sample individually, this method combines various samples into a pool and then tests the pool. Existing pooled testing procedures estimate the prevalence using dichotomous test outcomes. However, HIV test outcomes are inherently continuous, and their dichotomization may eliminate useful information. To overcome this problem, we develop a parametric procedure that utilizes the continuous outcomes. This procedure employs a hierarchical pooling model and estimates the prevalence using the likelihood equation. The likelihood equation is solved using an iterative algorithm, and a simulation study shows that our procedure yields very accurate estimates at a fraction of the cost of existing procedures.

Mesh:

Year:  1998        PMID: 9695191     DOI: 10.1002/(sici)1097-0258(19980715)17:13<1447::aid-sim862>3.0.co;2-k

Source DB:  PubMed          Journal:  Stat Med        ISSN: 0277-6715            Impact factor:   2.373


  9 in total

1.  Regression models for group testing data with pool dilution effects.

Authors:  Christopher S McMahan; Joshua M Tebbs; Christopher R Bilder
Journal:  Biostatistics       Date:  2012-11-28       Impact factor: 5.899

2.  Group testing case identification with biomarker information.

Authors:  Dewei Wang; Christopher S McMahan; Joshua M Tebbs; Christopher R Bilder
Journal:  Comput Stat Data Anal       Date:  2018-02-01       Impact factor: 1.681

3.  Optimal group testing strategy for the mass screening of SARS-CoV-2.

Authors:  Fengfeng Huang; Pengfei Guo; Yulan Wang
Journal:  Omega       Date:  2022-05-22       Impact factor: 8.673

4.  Group testing regression models with dilution submodels.

Authors:  Md S Warasi; Christopher S McMahan; Joshua M Tebbs; Christopher R Bilder
Journal:  Stat Med       Date:  2017-08-30       Impact factor: 2.373

5.  Estimating the prevalence of transmitted HIV drug resistance using pooled samples.

Authors:  Mariel M Finucane; Christopher F Rowley; Christopher J Paciorek; Max Essex; Marcello Pagano
Journal:  Stat Methods Med Res       Date:  2013-02-01       Impact factor: 3.021

6.  Optimal group testing designs for estimating prevalence with uncertain testing errors.

Authors:  Shih-Hao Huang; Mong-Na Lo Huang; Kerby Shedden; Weng Kee Wong
Journal:  J R Stat Soc Series B Stat Methodol       Date:  2016-12-19       Impact factor: 4.488

7.  Is group testing ready for prime-time in disease identification?

Authors:  Gregory Haber; Yaakov Malinovsky; Paul S Albert
Journal:  Stat Med       Date:  2021-04-28       Impact factor: 2.497

8.  Simulation of Pool Testing to Identify Patients With Coronavirus Disease 2019 Under Conditions of Limited Test Availability.

Authors:  Alhaji Cherif; Nadja Grobe; Xiaoling Wang; Peter Kotanko
Journal:  JAMA Netw Open       Date:  2020-06-01

9.  A methodology for deriving the sensitivity of pooled testing, based on viral load progression and pooling dilution.

Authors:  Ngoc T Nguyen; Hrayer Aprahamian; Ebru K Bish; Douglas R Bish
Journal:  J Transl Med       Date:  2019-08-06       Impact factor: 5.531

  9 in total

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