Literature DB >> 9689216

Methanococcus jannaschii genome: revisited.

N C Kyrpides1, G J Olsen, H P Klenk, O White, C R Woese.   

Abstract

Analysis of genomic sequences is necessarily an ongoing process. Initial gene assignments tend (wisely) to be on the conservative side (Venter, 1996). The analysis of the genome then grows in an iterative fashion as additional data and more sophisticated algorithms are brought to bear on the data. The present report is an emendation of the original gene list of Methanococcus jannaschii (Bult et al., 1996). By using a somewhat more updated database and more relaxed (and operator-intensive) pattern matching methods, we were able to add significantly to, and in a few cases amend, the gene identification table originally published by Bult et al. (1996).

Entities:  

Keywords:  NASA Discipline Exobiology; Non-NASA Center

Mesh:

Year:  1996        PMID: 9689216

Source DB:  PubMed          Journal:  Microb Comp Genomics        ISSN: 1090-6592


  10 in total

1.  Analysis of the Thermotoga maritima genome combining a variety of sequence similarity and genome context tools.

Authors:  N C Kyrpides; C A Ouzounis; I Iliopoulos; V Vonstein; R Overbeek
Journal:  Nucleic Acids Res       Date:  2000-11-15       Impact factor: 16.971

2.  Dictionary-driven protein annotation.

Authors:  Isidore Rigoutsos; Tien Huynh; Aris Floratos; Laxmi Parida; Daniel Platt
Journal:  Nucleic Acids Res       Date:  2002-09-01       Impact factor: 16.971

3.  Archaeal translation initiation revisited: the initiation factor 2 and eukaryotic initiation factor 2B alpha-beta-delta subunit families.

Authors:  N C Kyrpides; C R Woese
Journal:  Proc Natl Acad Sci U S A       Date:  1998-03-31       Impact factor: 11.205

Review 4.  Methanogenesis: genes, genomes, and who's on first?

Authors:  J N Reeve; J Nölling; R M Morgan; D R Smith
Journal:  J Bacteriol       Date:  1997-10       Impact factor: 3.490

5.  Universally conserved translation initiation factors.

Authors:  N C Kyrpides; C R Woese
Journal:  Proc Natl Acad Sci U S A       Date:  1998-01-06       Impact factor: 11.205

Review 6.  The past, present and future of genome-wide re-annotation.

Authors:  Christos A Ouzounis; Peter D Karp
Journal:  Genome Biol       Date:  2002-01-31       Impact factor: 13.583

7.  Transcriptional control by two leucine-responsive regulatory proteins in Halobacterium salinarum R1.

Authors:  Rita Schwaiger; Christoph Schwarz; Katarina Furtwängler; Valery Tarasov; Andy Wende; Dieter Oesterhelt
Journal:  BMC Mol Biol       Date:  2010-05-28       Impact factor: 2.946

Review 8.  Structure and synthesis of polyisoprenoids used in N-glycosylation across the three domains of life.

Authors:  Meredith B Jones; Julian N Rosenberg; Michael J Betenbaugh; Sharon S Krag
Journal:  Biochim Biophys Acta       Date:  2009-04-05

9.  Methanocaldococcus jannaschii uses a modified mevalonate pathway for biosynthesis of isopentenyl diphosphate.

Authors:  Laura L Grochowski; Huimin Xu; Robert H White
Journal:  J Bacteriol       Date:  2006-05       Impact factor: 3.490

10.  Characterization of feedback-resistant mevalonate kinases from the methanogenic archaeons Methanosaeta concilii and Methanocella paludicola.

Authors:  Ekaterina Kazieva; Yoko Yamamoto; Yoshinori Tajima; Keiichi Yokoyama; Joanna Katashkina; Yousuke Nishio
Journal:  Microbiology (Reading)       Date:  2017-09-05       Impact factor: 2.777

  10 in total

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