Literature DB >> 9419357

Universally conserved translation initiation factors.

N C Kyrpides1, C R Woese.   

Abstract

The process by which translation is initiated has long been considered similar in Bacteria and Eukarya but accomplished by a different unrelated set of factors in the two cases. This not only implies separate evolutionary histories for the two but also implies that at the universal ancestor stage, a translation initiation mechanism either did not exist or was of a different nature than the extant processes. We demonstrate herein that (i) the "analogous" translation initiation factors IF-1 and eIF-1A are actually related in sequence, (ii) the "eukaryotic" translation factor SUI1 is universal in distribution, and (iii) the eukaryotic/archaeal translation factor eIF-5A is homologous to the bacterial translation factor EF-P. Thus, the rudiments of translation initiation would seem to have been present in the universal ancestor stage. However, significant development and refinement subsequently occurred independently on both the bacterial lineage and on the archaeal/eukaryotic line.

Entities:  

Keywords:  NASA Discipline Exobiology; Non-NASA Center

Mesh:

Substances:

Year:  1998        PMID: 9419357      PMCID: PMC18182          DOI: 10.1073/pnas.95.1.224

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  47 in total

1.  Basic local alignment search tool.

Authors:  S F Altschul; W Gish; W Miller; E W Myers; D J Lipman
Journal:  J Mol Biol       Date:  1990-10-05       Impact factor: 5.469

Review 2.  Initiation of mRNA translation in prokaryotes.

Authors:  C O Gualerzi; C L Pon
Journal:  Biochemistry       Date:  1990-06-26       Impact factor: 3.162

3.  The role of mammalian initiation factor eIF-4D and its hypusine modification in translation.

Authors:  J W Hershey; Z Smit-McBride; J Schnier
Journal:  Biochim Biophys Acta       Date:  1990-08-27

4.  The suil suppressor locus in Saccharomyces cerevisiae encodes a translation factor that functions during tRNA(iMet) recognition of the start codon.

Authors:  H J Yoon; T F Donahue
Journal:  Mol Cell Biol       Date:  1992-01       Impact factor: 4.272

Review 5.  Archaea and the origin(s) of DNA replication proteins.

Authors:  D R Edgell; W F Doolittle
Journal:  Cell       Date:  1997-06-27       Impact factor: 41.582

6.  The concept of cellular evolution.

Authors:  C R Woese; G E Fox
Journal:  J Mol Evol       Date:  1977-09-20       Impact factor: 2.395

7.  A comprehensive set of sequence analysis programs for the VAX.

Authors:  J Devereux; P Haeberli; O Smithies
Journal:  Nucleic Acids Res       Date:  1984-01-11       Impact factor: 16.971

8.  Cloning, sequencing and overexpression of the gene for prokaryotic factor EF-P involved in peptide bond synthesis.

Authors:  H Aoki; S L Adams; D G Chung; M Yaguchi; S E Chuang; M C Ganoza
Journal:  Nucleic Acids Res       Date:  1991-11-25       Impact factor: 16.971

9.  Sequence determination and cDNA cloning of eukaryotic initiation factor 4D, the hypusine-containing protein.

Authors:  Z Smit-McBride; T E Dever; J W Hershey; W C Merrick
Journal:  J Biol Chem       Date:  1989-01-25       Impact factor: 5.157

10.  Identification of the hypusine-containing protein hy+ as translation initiation factor eIF-4D.

Authors:  H L Cooper; M H Park; J E Folk; B Safer; R Braverman
Journal:  Proc Natl Acad Sci U S A       Date:  1983-04       Impact factor: 11.205

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  75 in total

1.  Transcription in archaea.

Authors:  N C Kyrpides; C A Ouzounis
Journal:  Proc Natl Acad Sci U S A       Date:  1999-07-20       Impact factor: 11.205

2.  Conserved sequences in the beta subunit of archaeal and eukaryal translation initiation factor 2 (eIF2), absent from eIF5, mediate interaction with eIF2gamma.

Authors:  G M Thompson; E Pacheco; E O Melo; B A Castilho
Journal:  Biochem J       Date:  2000-05-01       Impact factor: 3.857

3.  Cell cycle arrest in archaea by the hypusination inhibitor N(1)-guanyl-1,7-diaminoheptane.

Authors:  B P Jansson; L Malandrin; H E Johansson
Journal:  J Bacteriol       Date:  2000-02       Impact factor: 3.490

4.  Structure and interactions of the translation initiation factor eIF1.

Authors:  C M Fletcher; T V Pestova; C U Hellen; G Wagner
Journal:  EMBO J       Date:  1999-05-04       Impact factor: 11.598

5.  Conserved bipartite motifs in yeast eIF5 and eIF2Bepsilon, GTPase-activating and GDP-GTP exchange factors in translation initiation, mediate binding to their common substrate eIF2.

Authors:  K Asano; T Krishnamoorthy; L Phan; G D Pavitt; A G Hinnebusch
Journal:  EMBO J       Date:  1999-03-15       Impact factor: 11.598

6.  Universal conservation in translation initiation revealed by human and archaeal homologs of bacterial translation initiation factor IF2.

Authors:  J H Lee; S K Choi; A Roll-Mecak; S K Burley; T E Dever
Journal:  Proc Natl Acad Sci U S A       Date:  1999-04-13       Impact factor: 11.205

7.  Nascent 60S ribosomal subunits enter the free pool bound by Nmd3p.

Authors:  J H Ho; G Kallstrom; A W Johnson
Journal:  RNA       Date:  2000-11       Impact factor: 4.942

8.  Exportin 4: a mediator of a novel nuclear export pathway in higher eukaryotes.

Authors:  G Lipowsky; F R Bischoff; P Schwarzmaier; R Kraft; S Kostka; E Hartmann; U Kutay; D Görlich
Journal:  EMBO J       Date:  2000-08-15       Impact factor: 11.598

9.  Selective stimulation of translation of leaderless mRNA by initiation factor 2: evolutionary implications for translation.

Authors:  S Grill; C O Gualerzi; P Londei; U Bläsi
Journal:  EMBO J       Date:  2000-08-01       Impact factor: 11.598

10.  Ala-His mediated peptide bond formation revisited.

Authors:  D C Larkin; S A Martinis; D J Roberts; G E Fox
Journal:  Orig Life Evol Biosph       Date:  2001-12       Impact factor: 1.950

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