Literature DB >> 9672831

A surface-based approach to DNA computation.

L M Smith1, R M Corn, A E Condon, M G Lagally, A G Frutos, Q Liu, A J Thiel.   

Abstract

A scalable approach to DNA-based computations is described. Complex combinatorial mixtures of DNA molecules encoding all possible answers to a computational problem are synthesized and attached to the surface of a solid support. This set of molecules is queried in successive MARK (hybridization) and DESTROY (enzymatic digestion) operations. Determination of the sequence of the DNA molecules remaining on the surface after completion of these operations yields the answer to the computational problem. Experimental demonstrations of aspects of the strategy are presented.

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Year:  1998        PMID: 9672831     DOI: 10.1089/cmb.1998.5.255

Source DB:  PubMed          Journal:  J Comput Biol        ISSN: 1066-5277            Impact factor:   1.479


  8 in total

1.  Molecular computation: RNA solutions to chess problems.

Authors:  D Faulhammer; A R Cukras; R J Lipton; L F Landweber
Journal:  Proc Natl Acad Sci U S A       Date:  2000-02-15       Impact factor: 11.205

2.  Covalent attachment of oligodeoxyribonucleotides to amine-modified Si (001) surfaces.

Authors:  T Strother; R J Hamers; L M Smith
Journal:  Nucleic Acids Res       Date:  2000-09-15       Impact factor: 16.971

3.  Parallelizing Assignment Problem with DNA Strands.

Authors:  Babak Khorsand; Abdorreza Savadi; Mahmoud Naghibzadeh
Journal:  Iran J Biotechnol       Date:  2020-01-01       Impact factor: 1.671

4.  A Parallel Biological Optimization Algorithm to Solve the Unbalanced Assignment Problem Based on DNA Molecular Computing.

Authors:  Zhaocai Wang; Jun Pu; Liling Cao; Jian Tan
Journal:  Int J Mol Sci       Date:  2015-10-23       Impact factor: 5.923

5.  A DNA algorithm for the job shop scheduling problem based on the Adleman-Lipton model.

Authors:  Xiang Tian; Xiyu Liu; Hongyan Zhang; Minghe Sun; Yuzhen Zhao
Journal:  PLoS One       Date:  2020-12-02       Impact factor: 3.240

6.  A Parallel DNA Algorithm for Solving the Quota Traveling Salesman Problem Based on Biocomputing Model.

Authors:  Zhaocai Wang; Xian Wu; Tunhua Wu
Journal:  Comput Intell Neurosci       Date:  2022-08-31

7.  Reversible Photoisomerization in Thin Surface Films from Azo-Functionalized Guanosine Derivatives.

Authors:  Matjaž Ličen; Stefano Masiero; Silvia Pieraccini; Irena Drevenšek-Olenik
Journal:  ACS Omega       Date:  2021-06-07

8.  Investigating the dynamics of surface-immobilized DNA nanomachines.

Authors:  Katherine E Dunn; Martin A Trefzer; Steven Johnson; Andy M Tyrrell
Journal:  Sci Rep       Date:  2016-07-08       Impact factor: 4.379

  8 in total

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