Matjaž Ličen1, Stefano Masiero2, Silvia Pieraccini2, Irena Drevenšek-Olenik1,3. 1. Faculty of Mathematics and Physics, University of Ljubljana, Jadranska 19, SI-1000 Ljubljana, Slovenia. 2. Dipartimento di Chimica "Giacomo Ciamician", Alma Mater Studiorum-Università di Bologna, Via San Giacomo 11, I-40126 Bologna, Italy. 3. Department of Complex Matter, Jožef Stefan Institute, Jamova 39, SI-1000 Ljubljana, Slovenia.
Abstract
Two novel azo-functionalized guanosine derivatives were synthesized, and their photoisomerization process was investigated in molecular monolayers at the air-water interface and in the Langmuir-Blodgett (LB) films on solid substrates. Measurements of surface pressure vs area isotherms, surface potential measurements, UV-visible (vis) absorption spectroscopy, Brewster angle microscopy (BAM), and atomic force microscopy (AFM) were performed. Despite not having a typical amphiphilic molecular structure, the derivatives formed stable films on the water surface. They could also undergo repeated photoisomerization in all of the investigated thin-film configurations. The observations suggest that in the films at the air-water interface, the molecules first exhibit a conformational change, and then they reorient to an energetically more favored orientation. In the LB films transferred onto solid substrates, the isomerization process occurs on a similar time scale as in solution. However, the isomerization efficiency is about an order of magnitude lower than that in solution. Our results show that DNA nucleobases functionalized with azobenzene moieties are suitable candidates for the fabrication of photoactive two-dimensional (2D) materials that can provide all beneficial functionalities of DNA-based compounds.
Two novel azo-functionalizedguanosine derivatives were synthesized, and their photoisomerization process was investigated in molecular monolayers at the air-water interface and in the Langmuir-Blodgett (LB) films on solid substrates. Measurements of surface pressure vs area isotherms, surface potential measurements, UV-visible (vis) absorption spectroscopy, Brewster angle microscopy (BAM), and atomic force microscopy (AFM) were performed. Despite not having a typical amphiphilic molecular structure, the derivatives formed stable films on the water surface. They could also undergo repeated photoisomerization in all of the investigated thin-film configurations. The observations suggest that in the films at the air-water interface, the molecules first exhibit a conformational change, and then they reorient to an energetically more favored orientation. In the LB films transferred onto solid substrates, the isomerization process occurs on a similar time scale as in solution. However, the isomerization efficiency is about an order of magnitude lower than that in solution. Our results show that DNA nucleobasesfunctionalized with azobenzene moieties are suitable candidates for the fabrication of photoactive two-dimensional (2D) materials that can provide all beneficial functionalities of DNA-based compounds.
Because
of their versatility and many appealing structural and
physical properties, DNA and its components and their derivatives
are emerging candidates for use in a wide range of applications, from
memory devices,[1,2] various self-assembled nanostructures,[3−12] molecular computing units,[13−21] and nanosensors[22−27] to biocompatible electronics.[28−41] Among the four DNA nucleobases, guanosine stands out due to its
ability to form stable and robust noncanonical structures with other
guanosine molecules, in particular G-quadruplexes. Due to this ability,
this nucleobase has recently become a target of extensive investigations
for use in nanomaterials[7,42−49] and DNA-targeting drugs.[50−52]Most of the above-mentioned
technological applications rely on
hydrogen bonding among guanine units. Therefore, the development of
effective mechanisms to control this bonding is a prerequisite for
further advancing of the field. Among different methods for controlling
hydrogen bonding,[53] light-driven control
is often favored because it is noninvasive and offers precise spatial
and temporal regulation. Such a control can be implemented by modification
of a nucleobase with a photoactive moiety so that its binding to other
nucleobases can be regulated by irradiation with light of a specific
wavelength.[54−56] The most common of such moieties are azobenzene derivatives.
They change their configuration from a stretched trans to a bent cis
isomer when irradiated with light of one wavelength (typically in
the UV spectral range) and back from cis to trans isomer when irradiated
with light of another wavelength (usually in the visible (vis) spectral
range). Alternatively, cis-to-trans back-isomerization can also take
place via spontaneous thermal relaxation. Their picosecond switching
times[57] and photochemical stability[58] make azobenzene derivatives a popular choice
for adding photoactive properties to various materials.Many
nanotechnological applications are based on thin-film-type
structures. One of the most precise methods to form such structures
is the Langmuir–Blodgett (LB) technique. In the LB technique,
two-dimensional (2D) materials are fabricated by first assembling
the amphiphilic molecules into a compact molecular monolayer at the
air–water interface (Langmuir monolayer) and then transferring
the obtained film onto a solid substrate. The technique enables the
fabrication of large-scale 2D materials[59,60] suitable for
photovoltaics,[61] molecular electronics,[41,62] model membranes,[63] functionalized coatings,[64] etc.[65]It is
known that base pairing can take place in the Langmuir film
of a selected nucleoside when its complementary nucleobase is introduced
either to the air–water interface[66−69] or into the water subphase.[70−80] In our recent study, we demonstrated that hydrogen bonding between
guanosine and its complementary nucleoside (cytidine) at the air–water
interface could be manipulated by optical irradiation.[81] Besides the azobenzene moiety, guanosine molecules
used in that study also possessed two hydrocarbon chains, which are
generally believed to be necessary for the formation of molecular
films at the water surface. In this work, we report on the light-driven
control of guanosine derivatives functionalized solely with the azobenzene
moieties. The results show that these very simple derivatives also
form stable Langmuir and LB films whose configurational state can
be repeatedly switched by optical irradiation.
Experimental
Results
Photoisomerization in Solution
To
obtain reference data for the efficiency and speed of photoisomerization
processes, we first experimented with 30 μM chloroform solutions
of GAzo and GAzo3 molecules. The solutions were alternatingly
irradiated with UV and blue light for 5 min, causing the molecules
to switch from trans to cis configuration and back. The resulting
changes in absorbance measured at 330 nm (absorption peak of the trans
isomers, see Figure in Section ) are
shown in Figure .
Figure 8
UV–vis absorption spectra of GAzo
(a) and GAzo3 (b) in chloroform solution. The chemical
structures of the molecules
are shown in the insets. Vertical dotted lines indicate the wavelengths
of the light-emitting diode (LED) light sources used to induce photoisomerization.
The trans spectra of the molecules were recorded after the solutions
had been kept in the dark for several days, and the cis spectra were
recorded after the solutions were irradiated with UV light until a
photostationary state was reached.
Figure 1
Temporal
modifications of normalized absorbance ε(t)/ε(t = 0) at 330 nm detected in
chloroform solutions of GAzo (blue) and GAzo3 (yellow)
during alternating irradiation with blue and UV light. Intervals of
UV irradiation are shaded in gray. The type of irradiation is also
marked at the bottom of the plot. Subfigure (b) shows fits of an exponential
function (dashed lines) to the data for one cycle of irradiation with
UV and blue light. Characteristic times obtained from the fits are
denoted next to the curves.
Temporal
modifications of normalized absorbance ε(t)/ε(t = 0) at 330 nm detected in
chloroform solutions of GAzo (blue) and GAzo3 (yellow)
during alternating irradiation with blue and UV light. Intervals of
UV irradiation are shaded in gray. The type of irradiation is also
marked at the bottom of the plot. Subfigure (b) shows fits of an exponential
function (dashed lines) to the data for one cycle of irradiation with
UV and blue light. Characteristic times obtained from the fits are
denoted next to the curves.When irradiated with UV light, the absorbance of GAzo solution
dropped by approximately 60%, while the absorbance of GAzo3 solution dropped by 40%. The characteristic times of the transitions,
obtained by fitting exponential functions to the experimental data
(Figure b), are 18
s for the trans–cis transition of GAzo, 25 s for the trans–cis
transition of GAzo3, 0.4 s for the cis–trans transition
of GAzo, and 0.6 s for the cis–trans transition of GAzo3. The fact that absorbance does not remain constant when saturation
is reached, but gradually increases during continued UV irradiation
and decreases during blue irradiation, indicates some irreversible
changes (bleaching) caused by the irradiation.
Photoisomerization
in Langmuir films
The surface pressure vs area isotherms
measured in five consecutive
compression–expansion cycles of the GAzo and GAzo3 Langmuir films and the Brewster angle microscopy (BAM) images of
typical film morphologies observed at different stages of the first
expansion–compression cycle are shown in Figures and 3, respectively.
Figure 2
(a) Surface
pressure vs mean molecular area isotherms measured
during five consecutive compression–expansion cycles of Langmuir
films of GAzo molecules. Data measured in different cycles are shown
with different colors, as indicated in the legend. Images (b)–(e)
are Brewster angle microscopy (BAM) images of the film captured during
the first compression–expansion cycle. The scale bar in subfigure
(b) represents the scale for all BAM images. The stages in the first
compression–expansion cycle in which the images were taken
are indicated on the isotherm.
Figure 3
Surface
pressure vs mean molecular area isotherms measured during
five consecutive compression–expansion cycles of Langmuir films
of GAzo3 molecules. Data measured in different cycles are
shown in different colors, as indicated in the legend. Images (b)–(e)
are Brewster angle microscopy images of the film captured during the
first compression–expansion cycle. The scale bar in subfigure
(b) represents the scale for all BAM images. The stages in the compression–expansion
cycle in which the images were taken are indicated on the isotherm.
(a) Surface
pressure vs mean molecular area isotherms measured
during five consecutive compression–expansion cycles of Langmuir
films of GAzo molecules. Data measured in different cycles are shown
with different colors, as indicated in the legend. Images (b)–(e)
are Brewster angle microscopy (BAM) images of the film captured during
the first compression–expansion cycle. The scale bar in subfigure
(b) represents the scale for all BAM images. The stages in the first
compression–expansion cycle in which the images were taken
are indicated on the isotherm.Surface
pressure vs mean molecular area isotherms measured during
five consecutive compression–expansion cycles of Langmuir films
of GAzo3 molecules. Data measured in different cycles are
shown in different colors, as indicated in the legend. Images (b)–(e)
are Brewster angle microscopy images of the film captured during the
first compression–expansion cycle. The scale bar in subfigure
(b) represents the scale for all BAM images. The stages in the compression–expansion
cycle in which the images were taken are indicated on the isotherm.In the case of GAzo (Figure a), the surface pressure starts increasing
at a mean molecular
area of approximately 80 Å2 and briefly plateaus at
around 45 Å2. With further compression, it keeps increasing
until it reaches the maximum value of 44 mN/m. The hysteresis present
between the compression and the expansion parts of the cycle indicates
binding between the molecules. Such hysteresis appears in Langmuir
films of lipophilic nucleoside derivatives of various nucleobases
and was investigated in more detail in our previous work.[82]The corresponding BAM images reveal structures
of varied densities
that are present on the water surface even before the start of the
film compression (Figure b). As the film is compressed, the frequency with which such
denser structures are observed increases while the surface pressure
still remains zero. The starting rise of surface pressure coincides
with full coverage of the water surface with the GAzo molecules. The
more the film is compressed, the brighter the images are, and some
bright specks appear on top of the initial film (Figure c). With further compression
they become more and more numerous (Figure d). No noticeable change in the structure
accompanies the resolved change in compressibility. During the initial
stages of expansion, the appearance of the film remains the same.
Only when the surface pressure gets close to zero again, does the
film start to slowly break apart into smaller pieces (Figure e).In the second compression/expansion
cycle, the surface pressure
starts increasing at a significantly lower mean molecular area than
in the first cycle, i.e., at about 65 Å2. The plateau
is not present anymore, which could indicate some binding between
the molecules that is not reversed upon expansion of the film formed
during the first compression. However, in all of the subsequent cycles,
the isotherms are almost identical to the one observed in the second
cycle, indicating that all irreversible changes happen in the first
cycle.During the first compression of GAzo molecules
(Figure a), the surface
pressure starts increasing at a similar value of the mean molecular
area as in the case of GAzo films (∼90 Å2),
which signifies that the effective surface area of the molecules is
dictated predominantly by the size of the guanosine moiety. However,
the compressibility of the GAzofilm is lower,
and the plateau is reached at a molecular area of around 70 Å2.Similar to GAzo films, BAM images of GAzofilms reveal visible structures present on the water
surface already
immediately after the deposition. After some compression of the barriers,
but before the surface pressure begins to increase, lamellar structures
can be observed (Figure b), which indicates some degree of molecular order. Similar lamellar
packing was also observed in Langmuir and LB films of other lipophilic
guanosine derivatives.[83,84] It is attributed to the formation
of G-ribbon-type assemblies.[85]When
the entire water surface is covered by the lamellar multilayer
(Figure c), further
compression causes surface pressure to increase. From here on, the
image observed by BAM is almost static, suggesting that the film is
very rigid and that the molecules are locked in place. Surprisingly,
this remains the case even after the surface pressure plateaus (Figure d). However, it is
possible that changes in the film structure causing the plateau occurred
near the barriers of the LB trough and not in the center of the film,
where the BAM images were taken.When the GAzofilm is expanded, the surface
pressure very quickly drops to zero. The drop is accompanied by the
appearance of cracks in the film, followed by its eventual breakup
(Figure e). Remarkably,
flakes of the broken film can still be observed even after the film
had been completely expanded. In the second cycle, the surface pressure
starts increasing at a much lower mean molecular area of 40 Å2. BAM images suggest that during the second compression cycle,
the flakes that remained on the water surface from the first cycle
are simply gathered up and compressed once again, leading to the striking
change in the shape of the detected isotherm. Both derivatives, GAzo and GAzo, exhibit quite nonclassical surface pressure
vs area dependence. We assume that the investigated part of the isotherms
corresponds to the liquid-expanded phase.After characterizing
the compression/expansion isotherms of the
films, we focused on the effect of optical irradiation on their UV–vis
transmission and absorption properties. The observed changes in the
optical transmission of the Langmuir films of GAzo and GAzo3 during subsequent trans–cis and cis–trans photoisomerization
processes are shown in Figure . The transmissivity was obtained as a ratio of intensities
of the probe radiation (345 nm) detected by two photodiodes, one placed
above and the other below the film. This ratio corresponds to the
inverse transmittance of the films and subphase at 345 nm. Analogous
to the solution, the inverse transmittance (and therefore also the
absorption) decreases during irradiation with UV light and increases
during irradiation with blue light. The effect of irradiation on the
surface pressure and surface potential of the films is described in
the Supporting Information.
Figure 4
Changes of the inverse
transmittivity of the Langmuir films of
GAzo (a) and GAzo3 (b) during subsequent irradiation with
UV and blue light. Intervals of UV irradiation are shaded in gray.
The type of irradiation is also marked at the bottom of the plot.
Fits of exponential functions to the data for one characteristic interval
are shown in subfigure (c). Characteristic times obtained from these
fits are denoted next to the curves.
Changes of the inverse
transmittivity of the Langmuir films of
GAzo (a) and GAzo3 (b) during subsequent irradiation with
UV and blue light. Intervals of UV irradiation are shaded in gray.
The type of irradiation is also marked at the bottom of the plot.
Fits of exponential functions to the data for one characteristic interval
are shown in subfigure (c). Characteristic times obtained from these
fits are denoted next to the curves.The characteristic times for the transitions shown in Figure , obtained by fitting
exponential functions to the experimental data, are 240 s for the
trans–cis transition of GAzo, 190 s for the trans–cis
transition of GAzo3, 430 s for the cis–trans transition
of GAzo, and 40 s for the cis–trans transition of GAzo3.Quite surprisingly, BAM imaging performed during the
irradiation
did not reveal any notable changes in the surface morphology of the
film. Nevertheless, we detected evident changes in the surface pressure
and surface potential of the film. Their analyses revealed that each
of the modified properties changed at quite a different rate. The
most rapid variations took place in optical transmittivity, while
modifications of surface pressure were the slowest. The results can
be found in the Supporting Information.
Photoisomerization in LB Films
Langmuir–Blodgett
films were fabricated at deposition surface pressures of 20 mN/m for
GAzo and of 33 mN/m GAzo3. Based on the atomic force microscopy
(AFM) imaging, most homogeneous LB films were obtained at these values.
AFM images of the films transferred onto silicon substrates are shown
in Figure . The GAzo
films exhibit a lamellar structure, while the GAzo3 films
appear to be quite amorphous. The height of the lamellae in Figure a is approximately
1 nm, which is consistent with the expected monolayer thickness. The
depth of the occasional holes found in the GAzo3 film is
also approximately 1 nm. However, similar to the Langmuir films, we
were unable to notice any evident changes in the surface morphology
of the films when the films were irradiated with the UV or blue light.
Similarly, there were also no significant differences observed between
the films transferred with or without prior UV irradiation. This signifies
that the isomerization reaction does not affect a close-packed surface
arrangement of the molecules, which suggests that their packing features
are determined mainly by the guanosine moiety.
Figure 5
AFM images of surface
morphology of GAzo (a) and GAzo3 (b) monolayers deposited
onto silicon substrates.
AFM images of surface
morphology of GAzo (a) and GAzo3 (b) monolayers deposited
onto silicon substrates.To enable measurements
of the UV–vis absorption spectra
of the LB films, the films were deposited onto quartz substrates.
Since it has been reported that the configuration state of the molecules
acquired during the LB deposition can influence the fraction of molecules
that are capable of isomerization after the deposition,[86] we performed LB depositions of non-irradiated
Langmuir films and also depositions of the films that were irradiated
with UV light for 60 min prior to the deposition. In the following,
the latter will be called cis-transferred LB films, while the former
will be called trans-transferred LB films.The UV–vis
absorption spectra of LB films of GAzo and photoinduced
changes in these spectra are shown in Figure . For the cis-transferred film, the principal
absorption peak at around 330 nm is slightly blue-shifted with respect
to the spectrum measured in solution (Figure a). A blue shift in the absorption spectrum
is known to occur for azobenzene aggregates with dipole moments in
the antiparallel arrangement. However, solvent interaction can also
affect the exact position of the peak.[58] The cis-transferred GAzo film has a significantly high absorbance
at 250 nm as well, which is consistent with the cis configuration
of azobenzene. In fact, the measured absorption spectrum corresponds
to the shape of the spectrum that is obtained by summing up the solution
absorption spectra of the trans- and cis-GAzo. This finding indicates that during the LB deposition of the
cis-transferred film, about half of the molecules remain fixed in
the cis configuration, possibly because cis–trans back-transition
is sterically hindered by intramolecular and substrate–adsorbate
interactions.
Figure 6
(a) Absorption spectra of cis-transferred (yellow) and
trans-transferred
(blue) LB films of GAzo and their comparison to the absorption spectrum
of GAzo in solution. The cis-transferred monolayer was deposited after
irradiating the film at the air–water interface with UV light
for 60 min, while the trans-transferred film was deposited without
any irradiation prior to the deposition. (b) Relative changes in absorbance
(at λ = 330 nm) of LB films of GAzo on quartz substrates during
subsequent irradiation with UV and blue light. Intervals of UV irradiation
are shaded in gray. The type of irradiation is also marked at the
bottom of the plot.
(a) Absorption spectra of cis-transferred (yellow) and
trans-transferred
(blue) LB films of GAzo and their comparison to the absorption spectrum
of GAzo in solution. The cis-transferred monolayer was deposited after
irradiating the film at the air–water interface with UV light
for 60 min, while the trans-transferred film was deposited without
any irradiation prior to the deposition. (b) Relative changes in absorbance
(at λ = 330 nm) of LB films of GAzo on quartz substrates during
subsequent irradiation with UV and blue light. Intervals of UV irradiation
are shaded in gray. The type of irradiation is also marked at the
bottom of the plot.The difference in absolute
absorbance values between the cis-transferred
and the trans-transferred films indicates that either more molecules
were deposited in the cis-transferred film or, since absorbance depends
on the angle between light polarization and the molecular transition
dipole moment,[58] that orientation of azobenzene
molecules in cis-transferred films is such that they absorb more light.
Since the polarization of the light of the spectrophotometer lies
in the plane of the substrate, this would mean that the angle between
the transition dipole moments of the molecules and the plane of the
substrate is, on average, smaller in the cis-transferred film than
in the trans-transferred film.Photoinduced changes in absorption
of the LB films of GAzo at 330
nm are shown in Figure b. Both trans-transferred and cis-transferred films exhibit a lower
irradiation-induced relative change in the absorbance than that measured
in the solution: namely, 17% for the trans-transferred film and 7%
for the cis-transferred film vs 60% obtained in solution (see Figure ). The smaller change
of absorbance in the cis-transferred film is consistent with the hypothesis
that by the LB deposition about half of the molecules remain hindered
in the cis state and consequently cannot contribute to the photoinduced
modification of the absorption spectrum.The characteristic
times for the transitions shown in Figure , obtained by fitting
exponential functions to the experimental data, are 8 s for the trans–cis
transition of the trans-transferred GAzo film, 6 s for the trans–cis
transition of the cis-transferred GAzo film, 2 s for the cis–trans
transition of the trans-transferred GAzo film, and 4 s for the cis–trans
transition of the cis-transferred GAzo film.The UV–vis
absorption spectra of LB-transferred GAzo3 films and photoinduced
changes in these spectra are shown
in Figure . In this
case, the principal absorbance peaks of both trans-transferred and
cis-transferred films are blue-shifted (Figure a). The ratio of absorbances between the
two absorption peaks for the cis-transferred film is slightly lower
than that for the trans-transferred film; however, the difference
is not so pronounced as in the case of GAzo films. For GAzo3 films, the absorption spectrum of the monolayers does not correspond
to any combination of the trans and cis spectra measured in chloroform
solution: the ratio of absorbances between the peak at 230 nm and
the valley at 270 nm is higher than that in the solution spectrum
of trans-GAzo3, but, on the other hand,
the spectra of the monolayers at the same time also do not exhibit
the additional peak at 260 nm as observed in the solution spectrum
of the cis-GAzo3. It is possible that
when the molecules are compressed into a close-packed film the three
azobenzene moieties begin to interact with each other, which affects
the shape of their absorption spectrum. This conclusion is based also
on the fact that no such blue shift was observed for the GAzo derivative
that contains only one rather than three azobenzene groups, and hence,
in the compressed GAzo films, azobenzene groups are less closely packed
than those in the compressed GAzo3 films.
Figure 7
(a) Absorption spectra
of cis-transferred (yellow) and trans-transferred
(blue) LB films of GAzo3 and their comparison to the absorption
spectrum of GAzo3 in solution. The absorption spectrum
marked with “50:50” represents the shape obtained by
summing both the trans and the cis solution spectra. All spectra in
solution are normalized so that the height of the absorption peak
at 330 nm is equal to the height of the corresponding peak in the
trans-transferred monolayer. The cis-transferred monolayer was deposited
after irradiating the film at the air–water interface with
UV light for 60 min, while the trans-transferred film was deposited
without prior irradiation. (b) Relative changes in absorbance (at
λ = 330 nm) of LB films of GAzo3 on quartz substrates
during subsequent irradiation with UV and blue light. Intervals of
UV irradiation are shaded in gray. The type of irradiation is also
marked at the bottom of the plot.
(a) Absorption spectra
of cis-transferred (yellow) and trans-transferred
(blue) LB films of GAzo3 and their comparison to the absorption
spectrum of GAzo3 in solution. The absorption spectrum
marked with “50:50” represents the shape obtained by
summing both the trans and the cis solution spectra. All spectra in
solution are normalized so that the height of the absorption peak
at 330 nm is equal to the height of the corresponding peak in the
trans-transferred monolayer. The cis-transferred monolayer was deposited
after irradiating the film at the air–water interface with
UV light for 60 min, while the trans-transferred film was deposited
without prior irradiation. (b) Relative changes in absorbance (at
λ = 330 nm) of LB films of GAzo3 on quartz substrates
during subsequent irradiation with UV and blue light. Intervals of
UV irradiation are shaded in gray. The type of irradiation is also
marked at the bottom of the plot.The amplitudes of the photoinduced changes in absorbance for both
films (Figure b) are
quite similar and are again much lower than that in solution (∼4
vs ∼40%), but much higher than it was measured in the Langmuir
film at the air–water interface (∼4 vs ∼0.4%).
For both films, the measured absorbance over time decreases, indicating
some irreversible changes occurring in the material.The characteristic
times of the absorbance modifications shown
in Figure b, obtained
by fitting exponential functions to the experimental data, are 6 s
for the trans–cis transition of the trans-transferred GAzo3 film, 12 s for the trans–cis transition of the cis-transferred
GAzo3 film, 6 s for the cis–trans transitions of
the trans-transferred GAzo3 film, and 7 s for the cis–trans
transition of the cis-transferred GAzo3 film.
Discussion and Conclusions
Despite not having a chemical
structure typical of the amphiphilic
molecules, GAzo and GAzo3 form relatively stable Langmuir
films at the air–water interface. The shapes of their isotherms
are reminiscent of those observed by Haycraft et al. for so-called
“bulge amphiphiles”, i.e., molecules with a large nonpolar
group attached to the hydrophobic end of the hydrocarbon chain.[87,88] They also observed a plateauing of the surface pressure after the
collapse, accompanied by the appearance of bright spots in the BAM
images of the film, which in time coalesced into larger formation.
Moreover, they also observed cases of large hysteresis in the compression–expansion
cycles.Observations by BAM revealed unique structures of Langmuir
films
of the two investigated molecules. GAzo molecules immediately formed
multilayered structures that became denser when the surface area of
the film was reduced. In contrast, GAzo molecules
formed a flake-like solid phase, which did not disintegrate after
the film was expanded. It is tempting to attribute the rigidity of
this phase to hydrogen bonding between the guanosine molecules. However,
similar dense structures were also observed in films of azo-functionalized
polymers[89] as well as in films of some
proteins.[90,91] So, the nature of the intriguing solidification
of the GAzo films still remains an open question.The observed irradiation-induced changes in the absorption spectra
of the films demonstrate that the investigated molecules can undergo
a reversible photoisomerization both at the air–water interface
and also after their LB deposition onto solid substrates. Therefore,
they provide an attractive possibility that isomerization of the azobenzene
group can be used to regulate their base pairing in various thin-film
configurations.[81] This effect will be investigated
in a separate study. However, the fraction of the molecules in the
films that are switched upon irradiation is considerably smaller than
the fraction of the molecules switched in solution. Several papers
have reported observations of photoinduced changes in the film structure
of photosensitive molecules using AFM.[86,92,93] However, in our case, regardless of evident modifications
in the optical absorption/transmission properties of the films, no
change in their surface morphology could be resolved.The characteristic
time τ for photoinduced isomerization
is proportional to the intensity I of the light used
for irradiation[94]where
ε is the molar absorption coefficient
of the molecules and Φ is the quantum yield for the specific
molecular transition. Because of large variations in I among different setups, it is difficult to make a meaningful comparison
of the obtained values of τ for different types of films and
for the solution. But, the ratio of τ obtained for different
molecules measured with the same setup is independent of I, so this makes more sense. Table shows the ratio τGAzo/τGAzo measured in different experimental configurations.
One can find out that there is no systematic rule dictating a relationship
between the characteristic times for isomerization of GAzo3 molecules (τGAzo) and the characteristic
times for isomerization of GAzo molecules (τGAzo).
In solution, τGAzo is larger than τGAzo for both transitions (trans–cis and cis–trans),
while in Langmuir films the situation is just the opposite. In trans-transferred
LB films, for cis–trans transition, τGAzo is larger than τGAzo, while the reverse is
valid for the trans–cis transition. In cis-transferred LB films,
the values of τGAzo for both transitions
are again larger than the values of τGAzo. This suggests
that in the investigated systems both the orientation of molecular
transition dipole moments and the quantum yield of the transitions
are quite different.
Table 1
Ratio of the Characteristic
Times
of Photoinduced Cis–Trans and Trans–Cis Transitions
for GAzo and GAzo3 Molecules in Various Investigated Systems
τGAzo/τGAzo3
trans–cis
cis–trans
solution
2.2
3.0
Langmuir film
0.8
0.1
trans-transferred LB film
0.8
3.0
cis-transferred
LB film
2.0
1.8
In summary, we synthesized two novel
azo-functionalizedguanosine
derivatives and demonstrated that despite the fact that they do not
possess a molecular structure typical of amphiphilic molecules, they
do form stable Langmuir films at the air–water interface. The
two compounds can undergo repeated, reversible photoisomerization
both in films at the water surface and in films transferred to solid
substrates. However, when compared to the isomerization efficiency
in solution, the isomerization efficiency in the films is significantly
reduced. The UV–vis spectra of the GAzo film transferred after
irradiation with UV light also revealed that part of the molecules
remain locked in the cis configuration and were unable to undergo
cis–trans isomerization.Our results demonstrate that
DNA nucleobasesfunctionalized with
relatively simple azobenzene moieties can form stable monomolecular
films that can undergo repetitive photoisomerization. They are, hence,
suitable candidates for the fabrication of photoactive 2D materials
that provide all beneficial functionalities of DNA-based compounds,
such as selective recognition, biocompatibility, high surface charge,
etc.
Materials and Methods
Azo-Functionalized
Guanosine Derivatives
The molecular structures of the two
azo-functionalizedguanosine
derivatives used in this work are shown in the insets of Figure a,b: we will refer to these molecules as GAzo and GAzo, respectively. GAzo has a single azobenzene moiety
attached at the 5′ position on the ribose (Figure a), while GAzo has three azobenzene moieties attached at positions 2′,
3′, and 5′ on the ribose (Figure b). Details on the synthetic procedures and
compound characterization are reported in the Supporting Information.UV–vis absorption spectra of GAzo
(a) and GAzo3 (b) in chloroform solution. The chemical
structures of the molecules
are shown in the insets. Vertical dotted lines indicate the wavelengths
of the light-emitting diode (LED) light sources used to induce photoisomerization.
The trans spectra of the molecules were recorded after the solutions
had been kept in the dark for several days, and the cis spectra were
recorded after the solutions were irradiated with UV light until a
photostationary state was reached.The absorption spectra of the molecules in chloroform solution
are shown in Figure . They demonstrate that trans–cis isomerization can be generated
by irradiation with UV light (λ = 340 nm), while cis–trans
isomerization can be induced by light in the visible range of the
spectrum (λ = 440 nm).
Langmuir Film Preparation
Langmuir
films investigated in this work were prepared in a KSVNima KN3002
Langmuir–Blodgett trough with a maximum available surface area
of 549 cm2 (7.5 cm × 73.2 cm) and two symmetrically
driven hydrophobic barriers for monolayer compression. All measurements
were performed at room temperature (23 ± 1 °C). The trough
was filled with ultrapure water (Adrona Onsite+). Before the deposition
of guanosine molecules, the purity of the water subphase was assessed
by measuring the change in surface pressure during the standard compression/expansion
cycle and monitoring the surface structure by Brewster angle microscopy
(BAM). A total change in surface pressure of less than 0.5 mN/m was
considered satisfactory.The surface pressure was measured by
the Wilhelmy plate method using paper plates purchased from Biolin
Scientific. The surface potential was measured using a KSVNIMA SPOT
device. The trough was also equipped with a leveling tool to counteract
the loss of water from the trough due to evaporation.The spreading
solution of guanosine derivatives was added to the
air–water interface one drop at a time using a glass syringe
(Hamilton). After spreading, the film was allowed to relax for 30
min in a noncompressed state to ensure that all of the solvent had
evaporated and internal equilibrium had been established. Then, the
barriers were compressed at a constant rate of 5 mm/min (3.75 cm2/min). When the target surface area or pressure was reached,
the film was left to relax for another 30 min to reach a new equilibrium
before optical irradiation or deposition to a solid substrate was
initiated.The LB films were deposited either onto quartz substrates
for measurements
of the UV–vis absorption spectra or onto silicon substrates
for surface imaging with atomic force microscopy (AFM). Quartz substrates
polished to the roughness of less than 1 nm and cut to pieces with
a size of 25 mm × 10 mm were purchased from Solis Beijing Tech,
while test-grade silicon wafers were purchased from University Wafer
and manually cut to pieces of 25 mm × 10 mm in size. The retraction
speed of the dipper in all LB depositions was 0.5 mm/min.
UV–Vis Absorption Measurements
The UV–vis
absorption spectra of solutions placed in quartz
cuvettes and of LB films deposited onto quartz substrates were measured
using a commercial UV–vis spectrophotometer (Hewlett Packard
8453). Measurements of changes in light absorption of the Langmuir
films at the air–water interface were performed by a custom-made
setup built around the LB trough with a sapphire window installed
at its bottom. A UV LED (Thorlabs M340L4, peak wavelength at 345 nm,
full width at half-maximum (FWHM) = 10 nm) was positioned above the
LB trough and acted as the light source for the measurements. The
emitted light passed through the Langmuir film, the subphase, and
the sapphire window. Then, it was detected by a photodiode. A second
photodiode was positioned above the LB trough to record the reference
intensity of the light source.
Optical
Irradiation System
The trans–cis
transition was induced by irradiating the samples with light from
one or multiple UV LEDs (Zhuhai Tianhui Electronic Co., TH-UV340T3WA,
peak wavelength at 340 nm, FWHM = 10 nm, 65 mW average total radiative
power), while the reverse cis–trans transition was induced
using blue LEDs (Chanzon, peak wavelength at 440 nm, FWHM = 20 nm,
500 mW average total radiative power). These two wavelengths correspond
to the absorption peaks of trans and cis isomers of GAzo and GAzo3 molecules (see Figure ).To be able to irradiate solutions and LB films during
measurements of their absorption spectra, we constructed a special
holder for cuvettes and quartz substrates. It allowed us to irradiate
the sample with actinic light from the sides, while the light beam
of the spectrophotometer entered the samples from the front.For irradiation of the films at the air–water interface,
two arrays of four UV LEDs were positioned above the water surface,
while four blue LEDs illuminated the water surface from the side.
During AFM imaging, the samples were irradiated by LEDs positioned
next to the scanning head.
Brewster Angle Microscopy
and Atomic Force
Microscopy
Brewster angle microscopy (BAM) of the surface
of the films was performed with the built-in device of an Accurion
EP3se ellipsometer, using the internal laser light source with a wavelength
of 658 nm. AFM images of the films were obtained with a Veeco Dimension
3100 AFM using tapping mode.
Authors: Stefano Lena; Paolo Neviani; Stefano Masiero; Silvia Pieraccini; Gian Piero Spada Journal: Angew Chem Int Ed Engl Date: 2010-05-10 Impact factor: 15.336
Authors: Hareem T Maune; Si-Ping Han; Robert D Barish; Marc Bockrath; William A Goddard; Paul W K Rothemund; Erik Winfree Journal: Nat Nanotechnol Date: 2009-11-08 Impact factor: 39.213