Literature DB >> 9666334

Unification of protein families.

L Holm1.   

Abstract

Computational biology exploits the evolutionary connectivity between proteins and protein families to predict structural and functional properties of uncharacterized gene products. In the past year, conceptual and statistical refinements have substantially improved algorithms for the detection of remote homologues. In conjunction with the rapid growth of biological databases, the global organization of proteins into sequence families, functional families and structural families has become both pertinent and feasible.

Mesh:

Substances:

Year:  1998        PMID: 9666334     DOI: 10.1016/s0959-440x(98)80072-9

Source DB:  PubMed          Journal:  Curr Opin Struct Biol        ISSN: 0959-440X            Impact factor:   6.809


  19 in total

1.  Automated diagnosis of data-model conflicts using metadata.

Authors:  R O Chen; R B Altman
Journal:  J Am Med Inform Assoc       Date:  1999 Sep-Oct       Impact factor: 4.497

Review 2.  Microbial relatives of the seed storage proteins of higher plants: conservation of structure and diversification of function during evolution of the cupin superfamily.

Authors:  J M Dunwell; S Khuri; P J Gane
Journal:  Microbiol Mol Biol Rev       Date:  2000-03       Impact factor: 11.056

3.  A comparison of position-specific score matrices based on sequence and structure alignments.

Authors:  Anna R Panchenko; Stephen H Bryant
Journal:  Protein Sci       Date:  2002-02       Impact factor: 6.725

4.  Structural similarity to link sequence space: new potential superfamilies and implications for structural genomics.

Authors:  Patrick Aloy; Baldomero Oliva; Enrique Querol; Francesc X Aviles; Robert B Russell
Journal:  Protein Sci       Date:  2002-05       Impact factor: 6.725

5.  Exploring the nonlinear geometry of protein homology.

Authors:  Michael A Farnum; Huafeng Xu; Dimitris K Agrafiotis
Journal:  Protein Sci       Date:  2003-08       Impact factor: 6.725

6.  A limited universe of membrane protein families and folds.

Authors:  Amit Oberai; Yungok Ihm; Sanguk Kim; James U Bowie
Journal:  Protein Sci       Date:  2006-07       Impact factor: 6.725

7.  Lipoylating and biotinylating enzymes contain a homologous catalytic module.

Authors:  P A Reche
Journal:  Protein Sci       Date:  2000-10       Impact factor: 6.725

8.  The repertoire of DNA-binding transcriptional regulators in Escherichia coli K-12.

Authors:  E Pérez-Rueda; J Collado-Vides
Journal:  Nucleic Acids Res       Date:  2000-04-15       Impact factor: 16.971

9.  The Ubp6 family of deubiquitinating enzymes contains a ubiquitin-like domain: SUb.

Authors:  A M Wyndham; R T Baker; G Chelvanayagam
Journal:  Protein Sci       Date:  1999-06       Impact factor: 6.725

10.  Structural and kinetic analysis of Schwanniomyces occidentalis invertase reveals a new oligomerization pattern and the role of its supplementary domain in substrate binding.

Authors:  Miguel Alvaro-Benito; Aitana Polo; Beatriz González; María Fernández-Lobato; Julia Sanz-Aparicio
Journal:  J Biol Chem       Date:  2010-02-24       Impact factor: 5.157

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