Literature DB >> 9647850

Microbial Community Composition of Wadden Sea Sediments as Revealed by Fluorescence In Situ Hybridization.

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Abstract

The microbial community composition of Wadden Sea sediments of the German North Sea coast was investigated by in situ hybridization with group-specific fluorescently labeled, rRNA-targeted oligonucleotides. A large fraction (up to 73%) of the DAPI (4',6-diamidino-2-phenylindole)-stained cells hybridized with the bacterial probes. Nearly 45% of the total cells could be further identified as belonging to known phyla. Members of the Cytophaga-Flavobacterium cluster were most abundant in all layers, followed by the sulfate-reducing bacteria.

Entities:  

Year:  1998        PMID： 9647850      PMCID： PMC106446     

Source DB:  PubMed          Journal:  Appl Environ Microbiol        ISSN： 0099-2240            Impact factor:   4.792


  23 in total

1.  Diversity and association of psychrophilic bacteria in Antarctic sea ice.

Authors:  J P Bowman; S A McCammon; M V Brown; D S Nichols; T A McMeekin
Journal:  Appl Environ Microbiol       Date:  1997-08       Impact factor: 4.792

2.  Phylogenetic analysis of the bacterial communities in marine sediments.

Authors:  J P Gray; R P Herwig
Journal:  Appl Environ Microbiol       Date:  1996-11       Impact factor: 4.792

3.  Distribution of sulfate-reducing bacteria in a stratified fjord (Mariager Fjord, Denmark) as evaluated by most-probable-number counts and denaturing gradient gel electrophoresis of PCR-amplified ribosomal DNA fragments.

Authors:  A Teske; C Wawer; G Muyzer; N B Ramsing
Journal:  Appl Environ Microbiol       Date:  1996-04       Impact factor: 4.792

4.  Phylogenetic analysis and in situ identification of bacteria in activated sludge.

Authors:  J Snaidr; R Amann; I Huber; W Ludwig; K H Schleifer
Journal:  Appl Environ Microbiol       Date:  1997-07       Impact factor: 4.792

5.  Community structure of a microbial mat: the phylogenetic dimension.

Authors:  J B Risatti; W C Capman; D A Stahl
Journal:  Proc Natl Acad Sci U S A       Date:  1994-10-11       Impact factor: 11.205

6.  Distribution of bacterial populations in a stratified fjord (Mariager Fjord, Denmark) quantified by in situ hybridization and related to chemical gradients in the water column.

Authors:  N B Ramsing; H Fossing; T G Ferdelman; F Andersen; B Thamdrup
Journal:  Appl Environ Microbiol       Date:  1996-04       Impact factor: 4.792

7.  Genetic diversity in Sargasso Sea bacterioplankton.

Authors:  S J Giovannoni; T B Britschgi; C L Moyer; K G Field
Journal:  Nature       Date:  1990-05-03       Impact factor: 49.962

8.  Estimation of diversity and community structure through restriction fragment length polymorphism distribution analysis of bacterial 16S rRNA genes from a microbial mat at an active, hydrothermal vent system, Loihi Seamount, Hawaii.

Authors:  C L Moyer; F C Dobbs; D M Karl
Journal:  Appl Environ Microbiol       Date:  1994-03       Impact factor: 4.792

9.  Polyphasic taxonomic study of the emended genus Arcobacter with Arcobacter butzleri comb. nov. and Arcobacter skirrowii sp. nov., an aerotolerant bacterium isolated from veterinary specimens.

Authors:  P Vandamme; M Vancanneyt; B Pot; L Mels; B Hoste; D Dewettinck; L Vlaes; C van den Borre; R Higgins; J Hommez
Journal:  Int J Syst Bacteriol       Date:  1992-07

10.  Characterization of 16S rRNA genes from oil field microbial communities indicates the presence of a variety of sulfate-reducing, fermentative, and sulfide-oxidizing bacteria.

Authors:  G Voordouw; S M Armstrong; M F Reimer; B Fouts; A J Telang; Y Shen; D Gevertz
Journal:  Appl Environ Microbiol       Date:  1996-05       Impact factor: 4.792
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  96 in total

1.  Diversity of sulfur isotope fractionations by sulfate-reducing prokaryotes.

Authors:  J Detmers; V Brüchert; K S Habicht; J Kuever
Journal:  Appl Environ Microbiol       Date:  2001-02       Impact factor: 4.792

2.  Community structure of denitrifiers, bacteria, and archaea along redox gradients in Pacific Northwest marine sediments by terminal restriction fragment length polymorphism analysis of amplified nitrite reductase (nirS) and 16S rRNA genes.

Authors:  G Braker; H L Ayala-del-Río; A H Devol; A Fesefeldt; J M Tiedje
Journal:  Appl Environ Microbiol       Date:  2001-04       Impact factor: 4.792

3.  High bacterial diversity in permanently cold marine sediments.

Authors:  K Ravenschlag; K Sahm; J Pernthaler; R Amann
Journal:  Appl Environ Microbiol       Date:  1999-09       Impact factor: 4.792

4.  Diversity of sulfate-reducing bacteria in oxic and anoxic regions of a microbial mat characterized by comparative analysis of dissimilatory sulfite reductase genes.

Authors:  D Minz; J L Flax; S J Green; G Muyzer; Y Cohen; M Wagner; B E Rittmann; D A Stahl
Journal:  Appl Environ Microbiol       Date:  1999-10       Impact factor: 4.792

5.  Population structure and phylogenetic characterization of marine benthic Archaea in deep-sea sediments.

Authors:  C Vetriani; H W Jannasch; B J MacGregor; D A Stahl; A L Reysenbach
Journal:  Appl Environ Microbiol       Date:  1999-10       Impact factor: 4.792

6.  Identification of and spatio-temporal differences between microbial assemblages from two neighboring sulfurous lakes: comparison by microscopy and denaturing gradient gel electrophoresis.

Authors:  E O Casamayor; H Schäfer; L Bañeras; C Pedrós-Alió; G Muyzer
Journal:  Appl Environ Microbiol       Date:  2000-02       Impact factor: 4.792

7.  Prokaryotic diversity in Zostera noltii-colonized marine sediments.

Authors:  A Cifuentes; J Antón; S Benlloch; A Donnelly; R A Herbert; F Rodríguez-Valera
Journal:  Appl Environ Microbiol       Date:  2000-04       Impact factor: 4.792

8.  Identification of 16S ribosomal DNA-defined bacterial populations at a shallow submarine hydrothermal vent near Milos Island (Greece).

Authors:  S M Sievert; J Kuever; G Muyzer
Journal:  Appl Environ Microbiol       Date:  2000-07       Impact factor: 4.792

9.  Community structure, cellular rRNA content, and activity of sulfate-reducing bacteria in marine arctic sediments.

Authors:  K Ravenschlag; K Sahm; C Knoblauch; B B Jørgensen; R Amann
Journal:  Appl Environ Microbiol       Date:  2000-08       Impact factor: 4.792

10.  Diversity of thiosulfate-oxidizing bacteria from marine sediments and hydrothermal vents.

Authors:  A Teske; T Brinkhoff; G Muyzer; D P Moser; J Rethmeier; H W Jannasch
Journal:  Appl Environ Microbiol       Date:  2000-08       Impact factor: 4.792
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