Literature DB >> 9646864

Minor groove-binding architectural proteins: structure, function, and DNA recognition.

C A Bewley1, A M Gronenborn, G M Clore.   

Abstract

To date, high-resolution structures have been solved for five different architectural proteins complexed to their DNA target sites. These include TATA-box-binding protein, integration host factor (IHF), high mobility group I(Y)[HMG I(Y)], and the HMG-box-containing proteins SRY and LEF-1. Each of these proteins interacts with DNA exclusively through minor groove contacts and alters DNA conformation. This paper reviews the structural features of these complexes and the roles they play in facilitating assembly of higher-order protein-DNA complexes and discusses elements that contribute to sequence-specific recognition and conformational changes.

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Year:  1998        PMID: 9646864      PMCID: PMC4781445          DOI: 10.1146/annurev.biophys.27.1.105

Source DB:  PubMed          Journal:  Annu Rev Biophys Biomol Struct        ISSN: 1056-8700


  82 in total

1.  Strong minor groove base conservation in sequence logos implies DNA distortion or base flipping during replication and transcription initiation.

Authors:  T D Schneider
Journal:  Nucleic Acids Res       Date:  2001-12-01       Impact factor: 16.971

2.  Exocyclic groups in the minor groove influence the backbone conformation of DNA.

Authors:  B Wellenzohn; W Flader; R H Winger; A Hallbrucker; E Mayer; K R Liedl
Journal:  Nucleic Acids Res       Date:  2001-12-15       Impact factor: 16.971

3.  Significance of ligand tails for interaction with the minor groove of B-DNA.

Authors:  B Wellenzohn; W Flader; R H Winger; A Hallbrucker; E Mayer; K R Liedl
Journal:  Biophys J       Date:  2001-09       Impact factor: 4.033

4.  SpSoxB1 serves an essential architectural function in the promoter SpAN, a tolloid/BMP1-related gene.

Authors:  A P Kenny; L M Angerer; R C Angerer
Journal:  Gene Expr       Date:  2001

5.  Energetic and structural considerations for the mechanism of protein sliding along DNA in the nonspecific BamHI-DNA complex.

Authors:  Jian Sun; Hector Viadiu; Aneel K Aggarwal; Harel Weinstein
Journal:  Biophys J       Date:  2003-05       Impact factor: 4.033

6.  Structure-specific binding of the proto-oncogene protein DEK to DNA.

Authors:  Tanja Waldmann; Martina Baack; Nicole Richter; Claudia Gruss
Journal:  Nucleic Acids Res       Date:  2003-12-01       Impact factor: 16.971

7.  DNA binding and cleavage by the periplasmic nuclease Vvn: a novel structure with a known active site.

Authors:  Chia-Lung Li; Lien-I Hor; Zee-Fen Chang; Li-Chu Tsai; Wei-Zen Yang; Hanna S Yuan
Journal:  EMBO J       Date:  2003-08-01       Impact factor: 11.598

8.  Expression of the high-mobility group protein HMGI(Y) in human trophoblast: potential role in trophoblast invasion of maternal tissue.

Authors:  Ana-Maria Bamberger; Antonis Makrigiannakis; Kerstin Röser; Jessica Radde; Tanja Carstens; Aljoscha M Flohr; Christoph M Bamberger; Jörn Bullerdiek; Thomas Löning
Journal:  Virchows Arch       Date:  2003-09-11       Impact factor: 4.064

9.  Characterization of the putative replisome organizer of the lactococcal bacteriophage r1t.

Authors:  Manuel Zúñiga; Blandine Franke-Fayard; Gerard Venema; Jan Kok; Arjen Nauta
Journal:  J Virol       Date:  2002-10       Impact factor: 5.103

10.  Structure and dynamics of the DNA-binding protein HU of B. stearothermophilus investigated by Raman and ultraviolet-resonance Raman spectroscopy.

Authors:  Doinita Serban; Sandra F Arcineigas; Constantinos E Vorgias; George J Thomas
Journal:  Protein Sci       Date:  2003-04       Impact factor: 6.725

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