Literature DB >> 14627833

Structure-specific binding of the proto-oncogene protein DEK to DNA.

Tanja Waldmann1, Martina Baack, Nicole Richter, Claudia Gruss.   

Abstract

The ubiquitous proto-oncogene protein DEK has been found to be associated with chromatin during the entire cell cycle. It changes the topology of DNA in chromatin and protein-free DNA through the introduction of positive supercoils. The sequence and structure specificities of DEK-DNA interactions are not completely understood. The binding of DEK to DNA is not sequence specific, but we describe here that DEK has a clear preference for supercoiled and four-way junction DNA. In the presence of topoisomerase II, DEK stimulates intermolecular catenation of circular DNA molecules. DEK also increases the probability of intermolecular ligation of linear DNA molecules by DNA ligase. These binding properties qualify DEK as an architectural protein.

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Year:  2003        PMID: 14627833      PMCID: PMC290247          DOI: 10.1093/nar/gkg864

Source DB:  PubMed          Journal:  Nucleic Acids Res        ISSN: 0305-1048            Impact factor:   16.971


  54 in total

Review 1.  What does 'chromatin remodeling' mean?

Authors:  J D Aalfs; R E Kingston
Journal:  Trends Biochem Sci       Date:  2000-11       Impact factor: 13.807

Review 2.  Transcription of chromatin: these are complex times.

Authors:  J A Armstrong; B M Emerson
Journal:  Curr Opin Genet Dev       Date:  1998-04       Impact factor: 5.578

Review 3.  Minor groove-binding architectural proteins: structure, function, and DNA recognition.

Authors:  C A Bewley; A M Gronenborn; G M Clore
Journal:  Annu Rev Biophys Biomol Struct       Date:  1998

Review 4.  SMC-mediated chromosome mechanics: a conserved scheme from bacteria to vertebrates?

Authors:  T Hirano
Journal:  Genes Dev       Date:  1999-01-01       Impact factor: 11.361

Review 5.  Modulation of DNA damage and DNA repair in chromatin.

Authors:  M J Smerdon; A Conconi
Journal:  Prog Nucleic Acid Res Mol Biol       Date:  1999

Review 6.  The structure of the four-way junction in DNA.

Authors:  D M Lilley; R M Clegg
Journal:  Annu Rev Biophys Biomol Struct       Date:  1993

7.  The nonspecific DNA-binding and -bending proteins HMG1 and HMG2 promote the assembly of complex nucleoprotein structures.

Authors:  T T Paull; M J Haykinson; R C Johnson
Journal:  Genes Dev       Date:  1993-08       Impact factor: 11.361

8.  Structural maintenance of chromosomes protein C-terminal domains bind preferentially to DNA with secondary structure.

Authors:  A T Akhmedov; C Frei; M Tsai-Pflugfelder; B Kemper; S M Gasser; R Jessberger
Journal:  J Biol Chem       Date:  1998-09-11       Impact factor: 5.157

9.  The specific interactions of HMG 1 and 2 with negatively supercoiled DNA are modulated by their acidic C-terminal domains and involve cysteine residues in their HMG 1/2 boxes.

Authors:  L G Sheflin; N W Fucile; S W Spaulding
Journal:  Biochemistry       Date:  1993-04-06       Impact factor: 3.162

Review 10.  Chromatin remodeling: a marriage between two families?

Authors:  K J Pollard; C L Peterson
Journal:  Bioessays       Date:  1998-09       Impact factor: 4.345

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  40 in total

1.  Phosphorylation by protein kinase CK2 changes the DNA binding properties of the human chromatin protein DEK.

Authors:  Ferdinand Kappes; Catalina Damoc; Rolf Knippers; Michael Przybylski; Lorenzo A Pinna; Claudia Gruss
Journal:  Mol Cell Biol       Date:  2004-07       Impact factor: 4.272

2.  Functional domains of the ubiquitous chromatin protein DEK.

Authors:  Ferdinand Kappes; Ingo Scholten; Nicole Richter; Claudia Gruss; Tanja Waldmann
Journal:  Mol Cell Biol       Date:  2004-07       Impact factor: 4.272

Review 3.  Control of tumorigenesis and chemoresistance by the DEK oncogene.

Authors:  Erica Riveiro-Falkenbach; María S Soengas
Journal:  Clin Cancer Res       Date:  2010-05-25       Impact factor: 12.531

4.  Effect of DNA supercoiling on the geometry of holliday junctions.

Authors:  Andrey L Mikheikin; Alexander Y Lushnikov; Yuri L Lyubchenko
Journal:  Biochemistry       Date:  2006-10-31       Impact factor: 3.162

5.  Secreted nuclear protein DEK regulates hematopoiesis through CXCR2 signaling.

Authors:  Maegan L Capitano; Nirit Mor-Vaknin; Anjan K Saha; Scott Cooper; Maureen Legendre; Haihong Guo; Rafael Contreras-Galindo; Ferdinand Kappes; Maureen A Sartor; Christopher T Lee; Xinxin Huang; David M Markovitz; Hal E Broxmeyer
Journal:  J Clin Invest       Date:  2019-05-20       Impact factor: 14.808

6.  Chromatin redistribution of the DEK oncoprotein represses hTERT transcription in leukemias.

Authors:  Maroun Karam; Morgan Thenoz; Valérie Capraro; Jean-Philippe Robin; Christiane Pinatel; Agnès Lancon; Perrine Galia; David Sibon; Xavier Thomas; Sophie Ducastelle-Lepretre; Franck Nicolini; Mohamed El-Hamri; Youcef Chelghoun; Eric Wattel; Franck Mortreux
Journal:  Neoplasia       Date:  2014-01       Impact factor: 5.715

Review 7.  The DEK oncoprotein and its emerging roles in gene regulation.

Authors:  C Sandén; U Gullberg
Journal:  Leukemia       Date:  2015-03-13       Impact factor: 11.528

8.  Apoptosis inhibition by the human DEK oncoprotein involves interference with p53 functions.

Authors:  Trisha M Wise-Draper; Hillary V Allen; Elizabeth E Jones; Kristen B Habash; Hiroshi Matsuo; Susanne I Wells
Journal:  Mol Cell Biol       Date:  2006-08-07       Impact factor: 4.272

9.  The human DEK proto-oncogene is a senescence inhibitor and an upregulated target of high-risk human papillomavirus E7.

Authors:  Trisha M Wise-Draper; Hillary V Allen; Megan N Thobe; Elizabeth E Jones; Kristen B Habash; Karl Münger; Susanne I Wells
Journal:  J Virol       Date:  2005-11       Impact factor: 5.103

Review 10.  Stacking the DEK: from chromatin topology to cancer stem cells.

Authors:  Lisa M Privette Vinnedge; Ferdinand Kappes; Nicolas Nassar; Susanne I Wells
Journal:  Cell Cycle       Date:  2012-12-19       Impact factor: 4.534

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