Literature DB >> 9636065

Folding kinetics of a fluorescent variant of monomeric lambda repressor.

S Ghaemmaghami1, J M Word, R E Burton, J S Richardson, T G Oas.   

Abstract

A tryptophan-containing variant of monomeric lambda repressor has been made, and its folding kinetics were analyzed at 20 degreesC using fluorescence stopped-flow and dynamic NMR. Equilibrium denaturation curves obtained by circular dichroism, fluorescence, and NMR are superimposable. Stopped-flow analysis indicates that in the absence of denaturants the folding reaction is complete within the dead-time of the experiment. Within higher denaturant conditions, where the folding rate is slower, NMR and stopped-flow agree on the folding and unfolding rates of the protein. In 3.4 M urea and 1.8 M GdmCl, we show that the variant folds within 2 ms. Extrapolation indicates that the folding time is 20 micro(s) in the absence of denaturants. All folding and unfolding reactions displayed monoexponential kinetics, and no burst-phases were observed. In addition, the thermodynamic parameters Delta G and meq obtained from the kinetic analysis are consistent with the equilibrium experiments. The results support a two-state Dleft and right arrow N folding model.

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Year:  1998        PMID: 9636065     DOI: 10.1021/bi980356b

Source DB:  PubMed          Journal:  Biochemistry        ISSN: 0006-2960            Impact factor:   3.162


  17 in total

1.  Exploring steric constraints on protein mutations using MAGE/PROBE.

Authors:  J M Word; R C Bateman; B K Presley; S C Lovell; D C Richardson
Journal:  Protein Sci       Date:  2000-11       Impact factor: 6.725

2.  A quantitative, high-throughput screen for protein stability.

Authors:  S Ghaemmaghami; M C Fitzgerald; T G Oas
Journal:  Proc Natl Acad Sci U S A       Date:  2000-07-18       Impact factor: 11.205

3.  Folding lambda-repressor at its speed limit.

Authors:  Wei Yuan Yang; Martin Gruebele
Journal:  Biophys J       Date:  2004-07       Impact factor: 4.033

4.  A natural missing link between activated and downhill protein folding scenarios.

Authors:  Feng Liu; Caroline Maynard; Gregory Scott; Artem Melnykov; Kathleen B Hall; Martin Gruebele
Journal:  Phys Chem Chem Phys       Date:  2010-02-11       Impact factor: 3.676

5.  Kinetics are probe-dependent during downhill folding of an engineered lambda6-85 protein.

Authors:  Hairong Ma; Martin Gruebele
Journal:  Proc Natl Acad Sci U S A       Date:  2005-02-07       Impact factor: 11.205

6.  Solvent-tuning the collapse and helix formation time scales of lambda(6-85)*.

Authors:  Charles Dumont; Yoshitaka Matsumura; Seung Joong Kim; Jinsong Li; Elena Kondrashkina; Hiroshi Kihara; Martin Gruebele
Journal:  Protein Sci       Date:  2006-11       Impact factor: 6.725

7.  The Surface of Protein λ6-85 Can Act as a Template for Recurring Poly(ethylene glycol) Structure.

Authors:  Shu-Han Chao; Jan Schäfer; Martin Gruebele
Journal:  Biochemistry       Date:  2017-10-06       Impact factor: 3.162

8.  Simulation-based fitting of protein-protein interaction potentials to SAXS experiments.

Authors:  Seung Joong Kim; Charles Dumont; Martin Gruebele
Journal:  Biophys J       Date:  2008-03-07       Impact factor: 4.033

9.  Slowing down downhill folding: a three-probe study.

Authors:  Seung Joong Kim; Yoshitaka Matsumura; Charles Dumont; Hiroshi Kihara; Martin Gruebele
Journal:  Biophys J       Date:  2009-07-08       Impact factor: 4.033

10.  Mapping fast protein folding with multiple-site fluorescent probes.

Authors:  Maxim B Prigozhin; Shu-Han Chao; Shahar Sukenik; Taras V Pogorelov; Martin Gruebele
Journal:  Proc Natl Acad Sci U S A       Date:  2015-06-15       Impact factor: 11.205

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