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Literature DB >> 9632833

GCUA: general codon usage analysis.

Abstract

UNLABELLED: The program General Codon Usage Analysis (GCUA) has been developed for analysing codon and amino acid usage patterns. AVAILABILITY: ftp://ftp.nhm.ac.uk/pub/gcua. Freely available for academic use, commercial users should contact the author. CONTACT: J.McInerney@nhm.ac.uk

Mesh：

Substances：
Codon

Year: 1998 PMID： 9632833 DOI： 10.1093/bioinformatics/14.4.372

Source DB: PubMed Journal: Bioinformatics ISSN： 1367-4803 Impact factor: 6.937

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Cited

62 in total

1. The Skp1 protein from Toxoplasma is modified by a cytoplasmic prolyl 4-hydroxylase associated with oxygen sensing in the social amoeba Dictyostelium.

Authors: Yuechi Xu; Kevin M Brown; Zhuo A Wang; Hanke van der Wel; Crystal Teygong; Dongmei Zhang; Ira J Blader; Christopher M West
Journal: J Biol Chem Date: 2012-05-30 Impact factor: 5.157

2. Faustovirus, an asfarvirus-related new lineage of giant viruses infecting amoebae.

Authors: Dorine Gaëlle Reteno; Samia Benamar; Jacques Bou Khalil; Julien Andreani; Nicholas Armstrong; Thomas Klose; Michael Rossmann; Philippe Colson; Didier Raoult; Bernard La Scola
Journal: J Virol Date: 2015-07 Impact factor: 5.103

3. Replicational and transcriptional selection on codon usage in Borrelia burgdorferi.

Authors: J O McInerney
Journal: Proc Natl Acad Sci U S A Date: 1998-09-01 Impact factor: 11.205

4. Nucleocapsid protein of cell culture-adapted Seoul virus strain 80-39: analysis of its encoding sequence, expression in yeast and immuno-reactivity.

Authors: Jonas Schmidt; Burkhard Jandrig; Boris Klempa; Kumiko Yoshimatsu; Jiro Arikawa; Helga Meisel; Matthias Niedrig; Christian Pitra; Detlev H Krüger; Rainer Ulrich
Journal: Virus Genes Date: 2005-01 Impact factor: 2.332

5. Genomic and physiological analyses of an indigenous strain, Enterococcus faecium 17OM39.

Authors: Vikas C Ghattargi; Yogesh S Nimonkar; Shaunak A Burse; Dimple Davray; Shreyas V Kumbhare; Sudarshan A Shetty; Meghana A Gaikwad; Mangesh V Suryavanshi; Swapnil P Doijad; Bhimashankar Utage; Om Prakash Sharma; Yogesh S Shouche; Bharati S Meti; Shrikant P Pawar
Journal: Funct Integr Genomics Date: 2018-03-19 Impact factor: 3.410

GCUA: general codon usage analysis.

1. The Skp1 protein from Toxoplasma is modified by a cytoplasmic prolyl 4-hydroxylase associated with oxygen sensing in the social amoeba Dictyostelium.

2. Faustovirus, an asfarvirus-related new lineage of giant viruses infecting amoebae.

3. Replicational and transcriptional selection on codon usage in Borrelia burgdorferi.

4. Nucleocapsid protein of cell culture-adapted Seoul virus strain 80-39: analysis of its encoding sequence, expression in yeast and immuno-reactivity.

5. Genomic and physiological analyses of an indigenous strain, Enterococcus faecium 17OM39.

6. Different evolutionary trajectories of European avian-like and classical swine H1N1 influenza A viruses.

7. Lines of evidence for horizontal gene transfer of a phenazine producing operon into multiple bacterial species.

8. Survey of transcripts expressed by the invasive juvenile stage of the liver fluke Fasciola hepatica.

9. Synonymous codon usage analysis of thirty two mycobacteriophage genomes.

10. AntigenDB: an immunoinformatics database of pathogen antigens.