Literature DB >> 9631301

Predictive docking of protein-protein and protein-DNA complexes.

M J Sternberg1, H A Gabb, R M Jackson.   

Abstract

Recent developments in algorithms to predict the docking of two proteins have considered both the initial rigid-body global search and subsequent screening and refinement. The result of two blind trials of protein docking are encouraging--for complexes that are not too large and do not undergo sizeable conformational change upon association, the algorithms are now able to suggest reasonably accurate models.

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Year:  1998        PMID： 9631301     DOI： 10.1016/s0959-440x(98)80047-x

Source DB:  PubMed          Journal:  Curr Opin Struct Biol        ISSN： 0959-440X            Impact factor:   6.809


  20 in total

1.  Calculation of weak protein-protein interactions: the pH dependence of the second virial coefficient.

Authors:  A H Elcock; J A McCammon
Journal:  Biophys J       Date:  2001-02       Impact factor: 4.033

2.  Modeling helix-turn-helix protein-induced DNA bending with knowledge-based distance restraints.

Authors:  W S Tzou; M J Hwang
Journal:  Biophys J       Date:  1999-09       Impact factor: 4.033

3.  A systematic study of low-resolution recognition in protein--protein complexes.

Authors:  I A Vakser; O G Matar; C F Lam
Journal:  Proc Natl Acad Sci U S A       Date:  1999-07-20       Impact factor: 11.205

4.  Soft protein-protein docking in internal coordinates.

Authors:  Juan Fernández-Recio; Maxim Totrov; Ruben Abagyan
Journal:  Protein Sci       Date:  2002-02       Impact factor: 6.725

5.  Structure prediction of protein complexes by an NMR-based protein docking algorithm.

Authors:  O Kohlbache; A Burchardt; A Moll; A Hildebrandt; P Bayer; H P Lenhof
Journal:  J Biomol NMR       Date:  2001-05       Impact factor: 2.835

6.  Electrostatics in protein-protein docking.

Authors:  Alexander Heifetz; Ephraim Katchalski-Katzir; Miriam Eisenstein
Journal:  Protein Sci       Date:  2002-03       Impact factor: 6.725

7.  Structure of the interferon-receptor complex determined by distance constraints from double-mutant cycles and flexible docking.

Authors:  L C Roisman; J Piehler; J Y Trosset; H A Scheraga; G Schreiber
Journal:  Proc Natl Acad Sci U S A       Date:  2001-11-06       Impact factor: 11.205

8.  A multimeric model for murine anti-apoptotic protein Bcl-2 and structural insights for its regulation by post-translational modification.

Authors:  Venkatarajan S Mathura; Kizhake V Soman; Tushar K Varma; Werner Braun
Journal:  J Mol Model       Date:  2003-08-30       Impact factor: 1.810

9.  Identification of amino acid residues of anthrax protective antigen involved in binding with lethal factor.

Authors:  Vibha Chauhan; Rakesh Bhatnagar
Journal:  Infect Immun       Date:  2002-08       Impact factor: 3.441

Review 10.  A review of protein-small molecule docking methods.

Authors:  R D Taylor; P J Jewsbury; J W Essex
Journal:  J Comput Aided Mol Des       Date:  2002-03       Impact factor: 3.686
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