Literature DB >> 9631297

Simulations of protein folding and unfolding.

C L Brooks1.   

Abstract

The 'new view' of protein folding is based on a statistical analysis of the landscape for protein folding. This perspective leads to the investigation of the statistical distributions of protein conformations as the folding protein approaches the native state from unfolded states. Molecular dynamics simulations of both the thermodynamics of protein folding and the kinetics of unfolding are beginning to explore the statistical nature of these distributions. They also provide connections between the theory of protein folding landscapes and the experimental observations of the properties of key ensembles of the conformations populated as folding progresses.

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Year:  1998        PMID: 9631297     DOI: 10.1016/s0959-440x(98)80043-2

Source DB:  PubMed          Journal:  Curr Opin Struct Biol        ISSN: 0959-440X            Impact factor:   6.809


  28 in total

1.  Molecular dynamics simulations of unfolding and refolding of a beta-hairpin fragment of protein G.

Authors:  V S Pande; D S Rokhsar
Journal:  Proc Natl Acad Sci U S A       Date:  1999-08-03       Impact factor: 11.205

2.  A simple model for calculating the kinetics of protein folding from three-dimensional structures.

Authors:  V Muñoz; W A Eaton
Journal:  Proc Natl Acad Sci U S A       Date:  1999-09-28       Impact factor: 11.205

3.  Single-molecule protein folding: diffusion fluorescence resonance energy transfer studies of the denaturation of chymotrypsin inhibitor 2.

Authors:  A A Deniz; T A Laurence; G S Beligere; M Dahan; A B Martin; D S Chemla; P E Dawson; P G Schultz; S Weiss
Journal:  Proc Natl Acad Sci U S A       Date:  2000-05-09       Impact factor: 11.205

4.  Two-dimensional IR correlation spectroscopy: sequential events in the unfolding process of the lambda cro-V55C repressor protein.

Authors:  H Fabian; H H Mantsch; C P Schultz
Journal:  Proc Natl Acad Sci U S A       Date:  1999-11-09       Impact factor: 11.205

Review 5.  Searching for "downhill scenarios" in protein folding.

Authors:  W A Eaton
Journal:  Proc Natl Acad Sci U S A       Date:  1999-05-25       Impact factor: 11.205

6.  Simulations of human lysozyme: probing the conformations triggering amyloidosis.

Authors:  George Moraitakis; Julia M Goodfellow
Journal:  Biophys J       Date:  2003-04       Impact factor: 4.033

7.  Conformational transition states of a beta-hairpin peptide between the ordered and disordered conformations in explicit water.

Authors:  Narutoshi Kamiya; Junichi Higo; Haruki Nakamura
Journal:  Protein Sci       Date:  2002-10       Impact factor: 6.725

Review 8.  Helical membrane protein conformations and their environment.

Authors:  Timothy A Cross; Dylan T Murray; Anthony Watts
Journal:  Eur Biophys J       Date:  2013-09-01       Impact factor: 1.733

9.  Exploring protein-folding ensembles: a variable-barrier model for the analysis of equilibrium unfolding experiments.

Authors:  Victor Muñoz; Jose M Sanchez-Ruiz
Journal:  Proc Natl Acad Sci U S A       Date:  2004-12-09       Impact factor: 11.205

10.  Effects of soman inhibition and of structural differences on cholinesterase molecular dynamics: a neutron scattering study.

Authors:  F Gabel; M Weik; P Masson; F Renault; D Fournier; L Brochier; B P Doctor; A Saxena; I Silman; G Zaccai
Journal:  Biophys J       Date:  2005-08-12       Impact factor: 4.033

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