Literature DB >> 9630596

Conformational stability studies of the pleckstrin DEP domain: definition of the domain boundaries.

A Kharrat1, S Millevoi, E Baraldi, C P Ponting, P Bork, A Pastore.   

Abstract

Pleckstrin is the major substrate of protein kinase C in platelets. It contains at its N- and C-termini two pleckstrin homology (PH) domains which have been proposed to mediate protein-protein and protein-lipid interactions. A new module, called DEP, has recently been identified by sequence analysis in the central region of pleckstrin. In order to study this module, several recombinant polypeptides corresponding to the DEP module and N- and C-termini extended forms have been expressed. Using circular dichroism (CD) and nuclear magnetic resonance (NMR) techniques, the domain boundaries have been determined that yield a soluble and folded pleckstrin DEP domain. This comprises 93 amino acids with an alpha/beta fold in agreement with secondary structure predictions. Stability studies indicate that the regions surrounding the DEP domain do not contribute to its stability suggesting that the phosphorylation sites at S113, T114 and S117 are in an unstructured region. Identification of the regions of pleckstrin that are folded shall facilitate determination of its structure and function. Copyright 1998 Elsevier Science B.V. All rights reserved.

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Year:  1998        PMID: 9630596     DOI: 10.1016/s0167-4838(98)00041-7

Source DB:  PubMed          Journal:  Biochim Biophys Acta        ISSN: 0006-3002


  8 in total

1.  Variation in the DEPDC5 locus is associated with progression to hepatocellular carcinoma in chronic hepatitis C virus carriers.

Authors:  Daiki Miki; Hidenori Ochi; C Nelson Hayes; Hiromi Abe; Tadahiko Yoshima; Hiroshi Aikata; Kenji Ikeda; Hiromitsu Kumada; Joji Toyota; Takashi Morizono; Tatsuhiko Tsunoda; Michiaki Kubo; Yusuke Nakamura; Naoyuki Kamatani; Kazuaki Chayama
Journal:  Nat Genet       Date:  2011-07-03       Impact factor: 38.330

Review 2.  DEP domains: structurally similar but functionally different.

Authors:  Sarah V Consonni; Madelon M Maurice; Johannes L Bos
Journal:  Nat Rev Mol Cell Biol       Date:  2014-04-16       Impact factor: 94.444

3.  Structural basis of the recognition of the dishevelled DEP domain in the Wnt signaling pathway.

Authors:  H C Wong; J Mao; J T Nguyen; S Srinivas; W Zhang; B Liu; L Li; D Wu; J Zheng
Journal:  Nat Struct Biol       Date:  2000-12

4.  Mutations in DEPDC5 cause familial focal epilepsy with variable foci.

Authors:  Leanne M Dibbens; Boukje de Vries; Simona Donatello; Sarah E Heron; Bree L Hodgson; Satyan Chintawar; Douglas E Crompton; James N Hughes; Susannah T Bellows; Karl Martin Klein; Petra M C Callenbach; Mark A Corbett; Alison E Gardner; Sara Kivity; Xenia Iona; Brigid M Regan; Claudia M Weller; Denis Crimmins; Terence J O'Brien; Rosa Guerrero-López; John C Mulley; Francois Dubeau; Laura Licchetta; Francesca Bisulli; Patrick Cossette; Paul Q Thomas; Jozef Gecz; Jose Serratosa; Oebele F Brouwer; Frederick Andermann; Eva Andermann; Arn M J M van den Maagdenberg; Massimo Pandolfo; Samuel F Berkovic; Ingrid E Scheffer
Journal:  Nat Genet       Date:  2013-03-31       Impact factor: 38.330

5.  Human genetic variation and the risk of hepatocellular carcinoma development.

Authors:  Sayeh Ezzikouri; Soumaya Benjelloun; Pascal Pineau
Journal:  Hepatol Int       Date:  2013-08-02       Impact factor: 6.047

6.  Identification of DEP domain-containing proteins by a machine learning method and experimental analysis of their expression in human HCC tissues.

Authors:  Zhijun Liao; Xinrui Wang; Yeting Zeng; Quan Zou
Journal:  Sci Rep       Date:  2016-12-21       Impact factor: 4.379

7.  Targeted interfering DEP domain containing 1 protein induces apoptosis in A549 lung adenocarcinoma cells through the NF-κB signaling pathway.

Authors:  Qingqing Wang; Aili Li; Junfei Jin; Guojin Huang
Journal:  Onco Targets Ther       Date:  2017-09-11       Impact factor: 4.147

8.  [DEPDC1 is Highly Expressed in Lung Adenocarcinoma and Promotes Tumor Cell Proliferation].

Authors:  Jian Shen; Mengmeng Xi
Journal:  Zhongguo Fei Ai Za Zhi       Date:  2021-06-17
  8 in total

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