Literature DB >> 963019

An analysis of the substrate-induced rate effect in the phosphoglucomutase system.

W J Ray, J W Long, J D Owens.   

Abstract

The rate constant for the catalytic transfer of the active-site PO3 group from rabbit muscle phosphoglucomutase to the hydroxyl group of a water molecule is about 3 x 10(-8) s-1 under optimal reaction conditions, but in the absence of the normal substrate, viz., at pH 7.5 and 30 degrees C, in the presence of saturating Mg2+; the corresponding constant for transfer to the 6-hydroxyl group of glucose 1-phosphate under analogous conditions, about 1000 s-1, is larger than this by some 3 x 10(10)-fold. Since no single factor appears to be capable of providing a rationale for a majority of this "substrate-induced rate effect" (Ray, jr., W.J., and Long, J.W. (1976), Biochemistry, the preceding paper in this issue), the change in the PO3-transfer rate produced by binding various parts of the phosphoglucosyl moiety to the enzyme, both separately and concurrently, was investigated. The rate of PO3 transfer to water is increased by up to 1000-fold by binding entities that provide the active site with a second PO3 group, e.g., ethyl phosphate or inorganic phosphite. Using an alcoholic acceptor further increases transfer efficiency (in the presence of bound phosphite): increase with methanol, about 2000-fold on a molar basis. The reactivities of ten other primary aliphatic alcohols vary by nearly 600-fold as the acidity of the PO3 acceptor is varied over a 4000-fold range. Although no straightforward relationship is observed between the efficiency of an alcohol as an acceptor and its acidity - presumably because of complications due to steric effects, for example - an increased transfer rate of 100-fold, relative to the water reaction, is estimated for a simple primary alcohol with a pKa similar to that expected for the 6-hydroxyl group of glucose 1-phosphate, when the alcohol is present at a concentration of 1 M. Joining an alcoholic acceptor and a PO3 group via five apparently inert bridging units changes PO3 transfer to an intramolecular process; in the case of 1,4-butanediol monophosphate the rate of transfer also increases by 240-fold, relative to the analogous reaction in the presence of 1 M propanol and bound inorganic phosphite. Comparable values also are obtained in comparisons of PO3 transfer rates for trans- 1,4-butenediol and 1,4-butynediol monophosphates relative to 1 M allyl and propargyl alcohols, respectively, in the presence of bound phosphite. An increased rate of transfer also is produced by binding the xylosyl part of the glucose ring, either when the acceptor is an hydroxyl group attached to the ring or when it is the hydroxyl group of a water molecule, e.g., as in the water reaction facilitated by bound xylose 1-phosphate. These and other results suggest that most of the differences between the rates of the water reaction and the glucose 1-phosphate reaction can be rationalized in terms of four fairly discrete factors whose approximate values are as follows: the PO4 factor, 1000-fold; the C-OH/H-OH factor, 100-fold; the nucleophile-binding factor, 250-fold; and the (CHOH)3-bridging factor, 200-fold...

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Year:  1976        PMID: 963019     DOI: 10.1021/bi00663a015

Source DB:  PubMed          Journal:  Biochemistry        ISSN: 0006-2960            Impact factor:   3.162


  29 in total

1.  On the attribution and additivity of binding energies.

Authors:  W P Jencks
Journal:  Proc Natl Acad Sci U S A       Date:  1981-07       Impact factor: 11.205

2.  Mechanism of action of rabbit liver phosphoglucomutase.

Authors:  H Jamil; J B Clarke
Journal:  Biochem J       Date:  1985-09-15       Impact factor: 3.857

Review 3.  A reevaluation of the origin of the rate acceleration for enzyme-catalyzed hydride transfer.

Authors:  Archie C Reyes; Tina L Amyes; John P Richard
Journal:  Org Biomol Chem       Date:  2017-10-31       Impact factor: 3.876

4.  Structural mutations that probe the interactions between the catalytic and dianion activation sites of triosephosphate isomerase.

Authors:  Xiang Zhai; Tina L Amyes; Rik K Wierenga; J Patrick Loria; John P Richard
Journal:  Biochemistry       Date:  2013-08-16       Impact factor: 3.162

5.  Theoretical investigation of the enzymatic phosphoryl transfer of β-phosphoglucomutase: revisiting both steps of the catalytic cycle.

Authors:  Brigitta Elsässer; Silvia Dohmeier-Fischer; Gregor Fels
Journal:  J Mol Model       Date:  2012-01-12       Impact factor: 1.810

6.  Reflections on the catalytic power of a TIM-barrel.

Authors:  John P Richard; Xiang Zhai; M Merced Malabanan
Journal:  Bioorg Chem       Date:  2014-07-11       Impact factor: 5.275

7.  The importance of the leader sequence for directing lanthionine formation in lacticin 481.

Authors:  Gregory C Patton; Moushumi Paul; Lisa E Cooper; Champak Chatterjee; Wilfred A van der Donk
Journal:  Biochemistry       Date:  2008-06-21       Impact factor: 3.162

8.  Mechanistic Imperatives for Deprotonation of Carbon Catalyzed by Triosephosphate Isomerase: Enzyme-Activation by Phosphite Dianion.

Authors:  Xiang Zhai; M Merced Malabanan; Tina L Amyes; John P Richard
Journal:  J Phys Org Chem       Date:  2014-04-01       Impact factor: 2.391

9.  α-Fluorophosphonates reveal how a phosphomutase conserves transition state conformation over hexose recognition in its two-step reaction.

Authors:  Yi Jin; Debabrata Bhattasali; Erika Pellegrini; Stephanie M Forget; Nicola J Baxter; Matthew J Cliff; Matthew W Bowler; David L Jakeman; G Michael Blackburn; Jonathan P Waltho
Journal:  Proc Natl Acad Sci U S A       Date:  2014-08-07       Impact factor: 11.205

10.  Enzymatic catalysis of proton transfer at carbon: activation of triosephosphate isomerase by phosphite dianion.

Authors:  Tina L Amyes; John P Richard
Journal:  Biochemistry       Date:  2007-04-20       Impact factor: 3.162

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