Literature DB >> 9612084

Biophysical compensation mechanisms buffering E. coli protein-nucleic acid interactions against changing environments.

M T Record1, E S Courtenay, S Cayley, H J Guttman.   

Abstract

Escherichia coli adapts to changes in growth osmolarity of at least 100-fold by making large changes in the amounts of intracellular water and solutes, including cytoplasmic K+. A wide range of in vitro salt, solute and biopolymer concentrations should therefore be considered 'physiological'. Paradoxically, these large, osmotically induced changes in cytoplasmic K+ concentration do not greatly affect the equilibria and kinetics of cytoplasmic protein-nucleic acid interactions. Biophysical effects resulting from changes in the amount of cytoplasmic water (such as macromolecular crowding) and in the concentrations of other cytoplasmic solutes appear to compensate for the effects of changes in cytoplasmic K+ concentration and thereby maintain protein-nucleic acid equilibria and kinetics in the range required for in vivo function.

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Year:  1998        PMID: 9612084     DOI: 10.1016/s0968-0004(98)01207-9

Source DB:  PubMed          Journal:  Trends Biochem Sci        ISSN: 0968-0004            Impact factor:   13.807


  72 in total

1.  Crowding effects on EcoRV kinetics and binding.

Authors:  J R Wenner; V A Bloomfield
Journal:  Biophys J       Date:  1999-12       Impact factor: 4.033

Review 2.  Osmosensing by bacteria: signals and membrane-based sensors.

Authors:  J M Wood
Journal:  Microbiol Mol Biol Rev       Date:  1999-03       Impact factor: 11.056

3.  Macromolecular crowding perturbs protein refolding kinetics: implications for folding inside the cell.

Authors:  B van den Berg; R Wain; C M Dobson; R J Ellis
Journal:  EMBO J       Date:  2000-08-01       Impact factor: 11.598

4.  Role of trehalose in growth at high temperature of Salmonella enterica serovar Typhimurium.

Authors:  D Cánovas; S A Fletcher; M Hayashi; L N Csonka
Journal:  J Bacteriol       Date:  2001-06       Impact factor: 3.490

5.  Life in a crowded world.

Authors:  Germán Rivas; Frank Ferrone; Judith Herzfeld
Journal:  EMBO Rep       Date:  2004-01       Impact factor: 8.807

6.  T4 AsiA blocks DNA recognition by remodeling sigma70 region 4.

Authors:  Lester J Lambert; Yufeng Wei; Virgil Schirf; Borries Demeler; Milton H Werner
Journal:  EMBO J       Date:  2004-07-15       Impact factor: 11.598

7.  Cation binding linked to a sequence-specific CAP-DNA interaction.

Authors:  Douglas F Stickle; Michael G Fried
Journal:  Biophys Chem       Date:  2006-06-19       Impact factor: 2.352

8.  In Vivo Titration of Folate Pathway Enzymes.

Authors:  Deepika Nambiar; Timkhite-Kulu Berhane; Robert Shew; Bryan Schwarz; Michael R Duff; Elizabeth E Howell
Journal:  Appl Environ Microbiol       Date:  2018-09-17       Impact factor: 4.792

Review 9.  Macromolecular Crowding In Vitro, In Vivo, and In Between.

Authors:  Germán Rivas; Allen P Minton
Journal:  Trends Biochem Sci       Date:  2016-09-23       Impact factor: 13.807

10.  Implications of macromolecular crowding for signal transduction and metabolite channeling.

Authors:  J M Rohwer; P W Postma; B N Kholodenko; H V Westerhoff
Journal:  Proc Natl Acad Sci U S A       Date:  1998-09-01       Impact factor: 11.205

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