Literature DB >> 9582121

Large-scale identification, mapping, and genotyping of single-nucleotide polymorphisms in the human genome.

D G Wang1, J B Fan, C J Siao, A Berno, P Young, R Sapolsky, G Ghandour, N Perkins, E Winchester, J Spencer, L Kruglyak, L Stein, L Hsie, T Topaloglou, E Hubbell, E Robinson, M Mittmann, M S Morris, N Shen, D Kilburn, J Rioux, C Nusbaum, S Rozen, T J Hudson, R Lipshutz, M Chee, E S Lander.   

Abstract

Single-nucleotide polymorphisms (SNPs) are the most frequent type of variation in the human genome, and they provide powerful tools for a variety of medical genetic studies. In a large-scale survey for SNPs, 2.3 megabases of human genomic DNA was examined by a combination of gel-based sequencing and high-density variation-detection DNA chips. A total of 3241 candidate SNPs were identified. A genetic map was constructed showing the location of 2227 of these SNPs. Prototype genotyping chips were developed that allow simultaneous genotyping of 500 SNPs. The results provide a characterization of human diversity at the nucleotide level and demonstrate the feasibility of large-scale identification of human SNPs.

Entities:  

Mesh:

Substances:

Year:  1998        PMID: 9582121     DOI: 10.1126/science.280.5366.1077

Source DB:  PubMed          Journal:  Science        ISSN: 0036-8075            Impact factor:   47.728


  433 in total

Review 1.  SNPing away at innate immunity.

Authors:  S J Chanock; C B Foster
Journal:  J Clin Invest       Date:  1999-08       Impact factor: 14.808

2.  The power of association studies to detect the contribution of candidate genetic loci to variation in complex traits.

Authors:  A D Long; C H Langley
Journal:  Genome Res       Date:  1999-08       Impact factor: 9.043

3.  Use of unlinked genetic markers to detect population stratification in association studies.

Authors:  J K Pritchard; N A Rosenberg
Journal:  Am J Hum Genet       Date:  1999-07       Impact factor: 11.025

Review 4.  Mutational analysis using oligonucleotide microarrays.

Authors:  J G Hacia; F S Collins
Journal:  J Med Genet       Date:  1999-10       Impact factor: 6.318

5.  A comprehensive view of human chromosome 1.

Authors:  P S White; E P Sulman; C J Porter; T C Matise
Journal:  Genome Res       Date:  1999-10       Impact factor: 9.043

6.  Identification of candidate coding region single nucleotide polymorphisms in 165 human genes using assembled expressed sequence tags.

Authors:  K Garg; P Green; D A Nickerson
Journal:  Genome Res       Date:  1999-11       Impact factor: 9.043

7.  Long homozygous chromosomal segments in reference families from the centre d'Etude du polymorphisme humain.

Authors:  K W Broman; J L Weber
Journal:  Am J Hum Genet       Date:  1999-12       Impact factor: 11.025

8.  Joint linkage and linkage disequilibrium mapping in natural populations.

Authors:  R Wu; Z B Zeng
Journal:  Genetics       Date:  2001-02       Impact factor: 4.562

9.  Robust and accurate single nucleotide polymorphism genotyping by dynamic allele-specific hybridization (DASH): design criteria and assay validation.

Authors:  J A Prince; L Feuk; W M Howell; M Jobs; T Emahazion; K Blennow; A J Brookes
Journal:  Genome Res       Date:  2001-01       Impact factor: 9.043

10.  A SNP resource for human chromosome 22: extracting dense clusters of SNPs from the genomic sequence.

Authors:  E Dawson; Y Chen; S Hunt; L J Smink; A Hunt; K Rice; S Livingston; S Bumpstead; R Bruskiewich; P Sham; R Ganske; M Adams; K Kawasaki; N Shimizu; S Minoshima; B Roe; D Bentley; I Dunham
Journal:  Genome Res       Date:  2001-01       Impact factor: 9.043

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.