Literature DB >> 9573049

A ribosomal function is necessary for efficient splicing of the T4 phage thymidylate synthase intron in vivo.

K Semrad1, R Schroeder.   

Abstract

Splicing of the group I intron of the T4 thymidylate synthase (td) gene was uncoupled from translation by introducing stop codons in the upstream exon. This resulted in severe splicing deficiency in vivo. Overexpression of a UGA suppressor tRNA partially rescued splicing, suggesting that this in vitro self-splicing intron requires translation for splicing in vivo. Inhibition of translation by the antibiotics chloramphenicol and spectinomycin also resulted in splicing deficiency. Ribosomal protein S12, a protein with RNA chaperone activity, and CYT-18, a protein that stabilizes the three-dimensional structure of group I introns, efficiently rescued the stop codon mutants. We identified a region in the upstream exon that interferes with splicing. Point mutations in this region efficiently alleviate the effect of a nonsense codon. We infer from these results that the ribosome acts as an RNA chaperone to facilitate proper folding of the intron.

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Year:  1998        PMID: 9573049      PMCID: PMC316773          DOI: 10.1101/gad.12.9.1327

Source DB:  PubMed          Journal:  Genes Dev        ISSN: 0890-9369            Impact factor:   11.361


  50 in total

1.  Influence of codon context on UGA suppression and readthrough.

Authors:  J Kopelowitz; C Hampe; R Goldman; M Reches; H Engelberg-Kulka
Journal:  J Mol Biol       Date:  1992-05-20       Impact factor: 5.469

2.  Exon sequences distant from the splice junction are required for efficient self-splicing of the Tetrahymena IVS.

Authors:  S A Woodson
Journal:  Nucleic Acids Res       Date:  1992-08-11       Impact factor: 16.971

Review 3.  Involvement of aminoacyl-tRNA synthetases and other proteins in group I and group II intron splicing.

Authors:  A M Lambowitz; P S Perlman
Journal:  Trends Biochem Sci       Date:  1990-11       Impact factor: 13.807

4.  Construction of versatile low-copy-number vectors for cloning, sequencing and gene expression in Escherichia coli.

Authors:  R F Wang; S R Kushner
Journal:  Gene       Date:  1991-04       Impact factor: 3.688

5.  Antibiotic inhibition of group I ribozyme function.

Authors:  U von Ahsen; J Davies; R Schroeder
Journal:  Nature       Date:  1991-09-26       Impact factor: 49.962

6.  Identification of an RNA binding site for human thymidylate synthase.

Authors:  E Chu; D Voeller; D M Koeller; J C Drake; C H Takimoto; G F Maley; F Maley; C J Allegra
Journal:  Proc Natl Acad Sci U S A       Date:  1993-01-15       Impact factor: 11.205

7.  Selective perturbation of G530 of 16 S rRNA by translational miscoding agents and a streptomycin-dependence mutation in protein S12.

Authors:  T Powers; H F Noller
Journal:  J Mol Biol       Date:  1994-01-07       Impact factor: 5.469

8.  Effects of mutations of the bulged nucleotide in the conserved P7 pairing element of the phage T4 td intron on ribozyme function.

Authors:  R Schroeder; U von Ahsen; M Belfort
Journal:  Biochemistry       Date:  1991-04-02       Impact factor: 3.162

9.  The neurospora CYT-18 protein suppresses defects in the phage T4 td intron by stabilizing the catalytically active structure of the intron core.

Authors:  G Mohr; A Zhang; J A Gianelos; M Belfort; A M Lambowitz
Journal:  Cell       Date:  1992-05-01       Impact factor: 41.582

10.  Non-competitive inhibition of group I intron RNA self-splicing by aminoglycoside antibiotics.

Authors:  U von Ahsen; J Davies; R Schroeder
Journal:  J Mol Biol       Date:  1992-08-20       Impact factor: 5.469

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  30 in total

1.  Influence of specific mutations on the thermal stability of the td group I intron in vitro and on its splicing efficiency in vivo: a comparative study.

Authors:  P Brion; R Schroeder; F Michel; E Westhof
Journal:  RNA       Date:  1999-07       Impact factor: 4.942

Review 2.  Coupled nucleotide covariations reveal dynamic RNA interaction patterns.

Authors:  A P Gultyaev; T Franch; K Gerdes
Journal:  RNA       Date:  2000-11       Impact factor: 4.942

Review 3.  Barriers to intron promiscuity in bacteria.

Authors:  D R Edgell; M Belfort; D A Shub
Journal:  J Bacteriol       Date:  2000-10       Impact factor: 3.490

4.  Molecular cloning of the maize gene crp1 reveals similarity between regulators of mitochondrial and chloroplast gene expression.

Authors:  D G Fisk; M B Walker; A Barkan
Journal:  EMBO J       Date:  1999-05-04       Impact factor: 11.598

5.  Monitoring intermediate folding states of the td group I intron in vivo.

Authors:  Christina Waldsich; Benoît Masquida; Eric Westhof; Renée Schroeder
Journal:  EMBO J       Date:  2002-10-01       Impact factor: 11.598

6.  RNA chaperone StpA loosens interactions of the tertiary structure in the td group I intron in vivo.

Authors:  Christina Waldsich; Rupert Grossberger; Renée Schroeder
Journal:  Genes Dev       Date:  2002-09-01       Impact factor: 11.361

Review 7.  RNA folding in living cells.

Authors:  Georgeta Zemora; Christina Waldsich
Journal:  RNA Biol       Date:  2010-11-01       Impact factor: 4.652

Review 8.  Mechanisms of StpA-mediated RNA remodeling.

Authors:  Martina Doetsch; Thomas Gstrein; Renée Schroeder; Boris Fürtig
Journal:  RNA Biol       Date:  2010-11-01       Impact factor: 4.652

Review 9.  Group I introns and inteins: disparate origins but convergent parasitic strategies.

Authors:  Rahul Raghavan; Michael F Minnick
Journal:  J Bacteriol       Date:  2009-08-07       Impact factor: 3.490

Review 10.  Ribozymes, riboswitches and beyond: regulation of gene expression without proteins.

Authors:  Alexander Serganov; Dinshaw J Patel
Journal:  Nat Rev Genet       Date:  2007-09-11       Impact factor: 53.242

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