Literature DB >> 9571046

Succinimide and isoaspartate residues in the crystal structures of hen egg-white lysozyme complexed with tri-N-acetylchitotriose.

S Noguchi1, K Miyawaki, Y Satow.   

Abstract

The isomerization of Asp101 to isoaspartate autocatalytically proceeds via a succinimide intermediate in hen egg-white lysozyme at a mildly acidic condition. The crystal structures of succinimide and isoaspartate forms of the lysozyme proteins, each complexed with a tri-N-acetylchitotriose ligand, have been determined at 1.8 A resolution, and distinctively elucidate coplanar cyclic aminosuccinyl and beta-linked isoaspartyl residues. Compared with the liganded native protein with normal Asp101, succinimide 101 protrudes toward the ligand, and isoaspartate 101 extends away from the ligand. The formations of these residues caused the loss of three hydrogen-bonds between the ligand and the side-chains of Asp101 and Asn103 along with 0.5 A displacement of the ligand location. Copyright 1998 Academic Press Limited.

Entities:  

Mesh:

Substances:

Year:  1998        PMID: 9571046     DOI: 10.1006/jmbi.1998.1674

Source DB:  PubMed          Journal:  J Mol Biol        ISSN: 0022-2836            Impact factor:   5.469


  12 in total

1.  Crystal structure of human L-isoaspartyl-O-methyl-transferase with S-adenosyl homocysteine at 1.6-A resolution and modeling of an isoaspartyl-containing peptide at the active site.

Authors:  Craig D Smith; Mike Carson; Alan M Friedman; Matthew M Skinner; Lawrence Delucas; Laurent Chantalat; Lance Weise; Takuji Shirasawa; Debashish Chattopadhyay
Journal:  Protein Sci       Date:  2002-03       Impact factor: 6.725

2.  Structural Analysis of Hen Egg Lysozyme Refolded after Denaturation at Acidic pH.

Authors:  Masayuki Oda; Tomoki Sano; Yuji O Kamatari; Yoshito Abe; Teikichi Ikura; Nobutoshi Ito
Journal:  Protein J       Date:  2022-01-30       Impact factor: 2.371

3.  Characterization of asparagine deamidation and aspartate isomerization in recombinant human interleukin-11.

Authors:  Wei Zhang; J Marta J Czupryn; Philip T Boyle; John Amari
Journal:  Pharm Res       Date:  2002-08       Impact factor: 4.200

4.  DNA damage-induced Bcl-xL deamidation is mediated by NHE-1 antiport regulated intracellular pH.

Authors:  Rui Zhao; David Oxley; Trevor S Smith; George A Follows; Anthony R Green; Denis R Alexander
Journal:  PLoS Biol       Date:  2007-01       Impact factor: 8.029

5.  Structural effects of protein aging: terminal marking by deamidation in human triosephosphate isomerase.

Authors:  Ignacio de la Mora-de la Mora; Alfredo Torres-Larios; Sergio Enríquez-Flores; Sara-Teresa Méndez; Adriana Castillo-Villanueva; Saúl Gómez-Manzo; Gabriel López-Velázquez; Jaime Marcial-Quino; Angélica Torres-Arroyo; Itzhel García-Torres; Horacio Reyes-Vivas; Jesús Oria-Hernández
Journal:  PLoS One       Date:  2015-04-17       Impact factor: 3.240

6.  Acetic acid can catalyze succinimide formation from aspartic acid residues by a concerted bond reorganization mechanism: a computational study.

Authors:  Ohgi Takahashi; Ryota Kirikoshi; Noriyoshi Manabe
Journal:  Int J Mol Sci       Date:  2015-01-12       Impact factor: 5.923

7.  Amylose recognition and ring-size determination of amylomaltase.

Authors:  Christian Roth; Nicole Weizenmann; Nicola Bexten; Wolfram Saenger; Wolfgang Zimmermann; Timm Maier; Norbert Sträter
Journal:  Sci Adv       Date:  2017-01-13       Impact factor: 14.136

8.  Identification of Sequence Similarities among Isomerization Hotspots in Crystallin Proteins.

Authors:  Yana A Lyon; Georgette M Sabbah; Ryan R Julian
Journal:  J Proteome Res       Date:  2017-03-07       Impact factor: 4.466

9.  Phosphate-Catalyzed Succinimide Formation from Asp Residues: A Computational Study of the Mechanism.

Authors:  Ryota Kirikoshi; Noriyoshi Manabe; Ohgi Takahashi
Journal:  Int J Mol Sci       Date:  2018-02-24       Impact factor: 5.923

10.  Structural and functional consequences of age-related isomerization in α-crystallins.

Authors:  Yana A Lyon; Miranda P Collier; Dylan L Riggs; Matteo T Degiacomi; Justin L P Benesch; Ryan R Julian
Journal:  J Biol Chem       Date:  2019-02-25       Impact factor: 5.157

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.