Literature DB >> 35094218

Structural Analysis of Hen Egg Lysozyme Refolded after Denaturation at Acidic pH.

Masayuki Oda1, Tomoki Sano2, Yuji O Kamatari3, Yoshito Abe4, Teikichi Ikura5,6, Nobutoshi Ito7.   

Abstract

Protein structures fluctuate in solution; therefore, proteins have multiple stable structures that are slightly different from each other. In this study, we determined the crystal structure of hen egg lysozyme refolded after denaturation at acidic pH (rHEL) and found a structure different from native HEL (nHEL). The different local conformations of the peptide bond between Asp101 and Gly102 found in the crystal structure was supported by the NMR results for nHEL and rHEL. The NMR experiments also showed shifts in the heteronuclear single quantum coherence signals derived from Thr43 and Asp52. The chemical shift change of Asp52 could be explained by the crystal structure of rHEL, showing the conformational change of Tyr53, whose phenol ring directly lies on the main chain of Asp52. The catalytic activity of rHEL was similar to that of nHEL, indicating that the conformational change had little effect on activity. In contrast, conformational changes could be detected by the binding of monoclonal antibodies against HEL. Using multiple methods, we successfully detected the unusual structure of HEL, which might be another stable structure of HEL in solution.
© 2021. The Author(s), under exclusive licence to Springer Science+Business Media, LLC, part of Springer Nature.

Entities:  

Keywords:  Antibody binding; Catalytic activity; Crystal structure; Multiple conformations; NMR

Mesh:

Substances:

Year:  2022        PMID: 35094218     DOI: 10.1007/s10930-021-10036-3

Source DB:  PubMed          Journal:  Protein J        ISSN: 1572-3887            Impact factor:   2.371


  25 in total

1.  Structure of lysozyme. A Fourier map of the electron density at 6 angstrom resolution obtained by x-ray diffraction.

Authors:  C C BLAKE; R H FENN; A C NORTH; D C PHILLIPS; R J POLJAK
Journal:  Nature       Date:  1962-12-22       Impact factor: 49.962

2.  Dynamic energy landscape view of coupled binding and protein conformational change: induced-fit versus population-shift mechanisms.

Authors:  Kei-Ichi Okazaki; Shoji Takada
Journal:  Proc Natl Acad Sci U S A       Date:  2008-08-04       Impact factor: 11.205

3.  Stabilization of lysozyme against irreversible inactivation by alterations of the Asp-Gly sequences.

Authors:  H Tomizawa; H Yamada; Y Hashimoto; T Imoto
Journal:  Protein Eng       Date:  1995-10

Review 4.  Structural metamorphism and polymorphism in proteins on the brink of thermodynamic stability.

Authors:  Prakash Kulkarni; Tsega L Solomon; Yanan He; Yihong Chen; Philip N Bryan; John Orban
Journal:  Protein Sci       Date:  2018-09-24       Impact factor: 6.725

5.  Characterisation of the conformational preference and dynamics of the intrinsically disordered N-terminal region of Beclin 1 by NMR spectroscopy.

Authors:  Shenggen Yao; Erinna F Lee; Anne Pettikiriarachchi; Marco Evangelista; David W Keizer; W Douglas Fairlie
Journal:  Biochim Biophys Acta       Date:  2016-06-08

6.  The methanol-induced transition and the expanded helical conformation in hen lysozyme.

Authors:  Y O Kamatari; T Konno; M Kataoka; K Akasaka
Journal:  Protein Sci       Date:  1998-03       Impact factor: 6.725

7.  Evaluation of the conformational equilibrium of reduced hen egg lysozyme by antibodies to the native form.

Authors:  Masayuki Oda; Aki Kitai; Akikazu Murakami; Miyuki Nishimura; Takatoshi Ohkuri; Yoshito Abe; Tadashi Ueda; Haruki Nakamura; Takachika Azuma
Journal:  Arch Biochem Biophys       Date:  2009-11-26       Impact factor: 4.013

8.  Structural determinants of protein dynamics: analysis of 15N NMR relaxation measurements for main-chain and side-chain nuclei of hen egg white lysozyme.

Authors:  M Buck; J Boyd; C Redfield; D A MacKenzie; D J Jeenes; D B Archer; C M Dobson
Journal:  Biochemistry       Date:  1995-03-28       Impact factor: 3.162

9.  Lysozyme revisited: crystallographic evidence for distortion of an N-acetylmuramic acid residue bound in site D.

Authors:  N C Strynadka; M N James
Journal:  J Mol Biol       Date:  1991-07-20       Impact factor: 5.469

10.  A three-disulphide derivative of hen lysozyme. Structure, dynamics and stability.

Authors:  S E Radford; D N Woolfson; S R Martin; G Lowe; C M Dobson
Journal:  Biochem J       Date:  1991-01-01       Impact factor: 3.857

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