Literature DB >> 9570319

The U14 snoRNA is required for 2'-O-methylation of the pre-18S rRNA in Xenopus oocytes.

D A Dunbar1, S J Baserga.   

Abstract

We have studied the role of the U14 small nucleolar RNA (snoRNA) in pre-rRNA methylation and processing in Xenopus oocytes. Depletion of U14 in Xenopus oocytes was achieved by co-injecting two nonoverlapping antisense oligonucleotides. Focusing on the earliest precursor, depletion experiments revealed that the U14 snoRNA is essential for 2'-O-ribose methylation at nt 427 of the 18S rRNA. Injection of U14-depleted oocytes with specific U14 mutant snoRNAs indicated that conserved domain B, but not domain A, of U14 is required for the methylation reaction. When the effect of U14 on pre-rRNA processing is assayed, we find only modest effects on 18S rRNA levels, and no effect on the type or accumulation of 18S precursors, suggesting a role for U14 in a step in ribosome biogenesis other than cleavage of the pre-rRNA. Xenopus U14 is, therefore, a Box C/D fibrillarin-associated snoRNA that is required for site-specific 2'-O-ribose methylation of pre-rRNA.

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Year:  1998        PMID: 9570319      PMCID: PMC1369608     

Source DB:  PubMed          Journal:  RNA        ISSN: 1355-8382            Impact factor:   4.942


  53 in total

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Journal:  Cell       Date:  1987-02-27       Impact factor: 41.582

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Journal:  Biochim Biophys Acta       Date:  1976-09-06

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Authors:  J Lapham; Y T Yu; M D Shu; J A Steitz; D M Crothers
Journal:  RNA       Date:  1997-09       Impact factor: 4.942

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Authors:  S A Udem; J R Warner
Journal:  J Mol Biol       Date:  1972-03-28       Impact factor: 5.469

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Journal:  Mol Cell Biol       Date:  1990-03       Impact factor: 4.272

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Authors:  J R Warner; M Girard; H Latham; J E Darnell
Journal:  J Mol Biol       Date:  1966-08       Impact factor: 5.469

8.  Characterization of an SNR gene locus in Saccharomyces cerevisiae that specifies both dispensible and essential small nuclear RNAs.

Authors:  J Zagorski; D Tollervey; M J Fournier
Journal:  Mol Cell Biol       Date:  1988-08       Impact factor: 4.272

9.  Synthesis of heterogeneous nuclear RNA in full-grown oocytes of Xenopus laevis (Daudin).

Authors:  D M Anderson; L D Smith
Journal:  Cell       Date:  1977-07       Impact factor: 41.582

10.  Assembly of functional U1 and U2 human-amphibian hybrid snRNPs in Xenopus laevis oocytes.

Authors:  Z Q Pan; C Prives
Journal:  Science       Date:  1988-09-09       Impact factor: 47.728

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  16 in total

1.  A genome-wide analysis of C/D and H/ACA-like small nucleolar RNAs in Trypanosoma brucei reveals a trypanosome-specific pattern of rRNA modification.

Authors:  Xue-Hai Liang; Shai Uliel; Avraham Hury; Sarit Barth; Tirza Doniger; Ron Unger; Shulamit Michaeli
Journal:  RNA       Date:  2005-05       Impact factor: 4.942

2.  Loss of rRNA modifications in the decoding center of the ribosome impairs translation and strongly delays pre-rRNA processing.

Authors:  Xue-Hai Liang; Qing Liu; Maurille J Fournier
Journal:  RNA       Date:  2009-07-23       Impact factor: 4.942

3.  The snoRNA box C/D motif directs nucleolar targeting and also couples snoRNA synthesis and localization.

Authors:  D A Samarsky; M J Fournier; R H Singer; E Bertrand
Journal:  EMBO J       Date:  1998-07-01       Impact factor: 11.598

4.  Arabidopsis small nucleolar RNA monitors the efficient pre-rRNA processing during ribosome biogenesis.

Authors:  Pan Zhu; Yuqiu Wang; Nanxun Qin; Feng Wang; Jia Wang; Xing Wang Deng; Danmeng Zhu
Journal:  Proc Natl Acad Sci U S A       Date:  2016-10-05       Impact factor: 11.205

5.  Characterisation of the U83 and U84 small nucleolar RNAs: two novel 2'-O-ribose methylation guide RNAs that lack complementarities to ribosomal RNAs.

Authors:  B E Jády; T Kiss
Journal:  Nucleic Acids Res       Date:  2000-03-15       Impact factor: 16.971

6.  The genes for small nucleolar RNAs in Trypanosoma brucei are organized in clusters and are transcribed as a polycistronic RNA.

Authors:  D A Dunbar; A A Chen; S Wormsley; S J Baserga
Journal:  Nucleic Acids Res       Date:  2000-08-01       Impact factor: 16.971

7.  Strong dependence between functional domains in a dual-function snoRNA infers coupling of rRNA processing and modification events.

Authors:  Xue-hai Liang; Qing Liu; Quansheng Liu; Thomas H King; Maurille J Fournier
Journal:  Nucleic Acids Res       Date:  2010-02-09       Impact factor: 16.971

8.  Coordinated nuclear export of 60S ribosomal subunits and NMD3 in vertebrates.

Authors:  Christopher R Trotta; Elsebet Lund; Lawrence Kahan; Arlen W Johnson; James E Dahlberg
Journal:  EMBO J       Date:  2003-06-02       Impact factor: 11.598

9.  Differential RNA-dependent ATPase activities of four rRNA processing yeast DEAD-box proteins.

Authors:  Ivelitza Garcia; Olke C Uhlenbeck
Journal:  Biochemistry       Date:  2008-11-25       Impact factor: 3.162

10.  Computational prediction and validation of C/D, H/ACA and Eh_U3 snoRNAs of Entamoeba histolytica.

Authors:  Devinder Kaur; Abhishek Kumar Gupta; Vandana Kumari; Rahul Sharma; Alok Bhattacharya; Sudha Bhattacharya
Journal:  BMC Genomics       Date:  2012-08-14       Impact factor: 3.969

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