Literature DB >> 9555731

Sequencing exons 5 to 8 of the p53 gene by MALDI-TOF mass spectrometry.

D J Fu1, K Tang, A Braun, D Reuter, B Darnhofer-Demar, D P Little, M J O'Donnell, C R Cantor, H Köster.   

Abstract

Matrix-assisted laser desorption ionization time of flight mass spectrometry was used to sequence exons 5 to 8 of the human p53 gene. A single tube procedure was established for target amplification and mass spectrometric (MS) sequencing. The MS sequencing scheme is designed for high throughput and parallel sample processing, and is amenable to full automation. Reliable sequencing data were obtained using fmol sample amounts. The high resolution and accuracy of MS sequencing was demonstrated by direct sequencing of a heterozygous template.

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Year:  1998        PMID: 9555731     DOI: 10.1038/nbt0498-381

Source DB:  PubMed          Journal:  Nat Biotechnol        ISSN: 1087-0156            Impact factor:   54.908


  24 in total

Review 1.  Automated mutation analysis.

Authors:  D Ravine
Journal:  J Inherit Metab Dis       Date:  1999-06       Impact factor: 4.982

2.  A microsphere-based assay for multiplexed single nucleotide polymorphism analysis using single base chain extension.

Authors:  J Chen; M A Iannone; M S Li; J D Taylor; P Rivers; A J Nelsen; K A Slentz-Kesler; A Roses; M P Weiner
Journal:  Genome Res       Date:  2000-04       Impact factor: 9.043

3.  Automated mass spectrometry: a revolutionary technology for clinical diagnostics.

Authors:  J Leushner; N H Chiu
Journal:  Mol Diagn       Date:  2000-12

4.  Rapid determination of short DNA sequences by the use of MALDI-MS.

Authors:  E Nordhoff; C Luebbert; G Thiele; V Heiser; H Lehrach
Journal:  Nucleic Acids Res       Date:  2000-10-15       Impact factor: 16.971

5.  DNA sequencing and genotyping by transcriptional synthesis of chain-terminated RNA ladders and MALDI-TOF mass spectrometry.

Authors:  Y Kwon; K Tang; C Cantor; H Köster; C Kang
Journal:  Nucleic Acids Res       Date:  2001-02-01       Impact factor: 16.971

6.  Digital detection of genetic mutations using SPC-sequencing.

Authors:  Hameer Ruparel; Michael E Ulz; Sobin Kim; Jingyue Ju
Journal:  Genome Res       Date:  2004-02       Impact factor: 9.043

7.  Microfluidic device reads up to four consecutive base pairs in DNA sequencing-by-synthesis.

Authors:  Emil P Kartalov; Stephen R Quake
Journal:  Nucleic Acids Res       Date:  2004-05-20       Impact factor: 16.971

Review 8.  Techniques used in studies of epigenome dysregulation due to aberrant DNA methylation: an emphasis on fetal-based adult diseases.

Authors:  Shuk-mei Ho; Wan-yee Tang
Journal:  Reprod Toxicol       Date:  2007-01-19       Impact factor: 3.143

9.  Four-color DNA sequencing with 3'-O-modified nucleotide reversible terminators and chemically cleavable fluorescent dideoxynucleotides.

Authors:  Jia Guo; Ning Xu; Zengmin Li; Shenglong Zhang; Jian Wu; Dae Hyun Kim; Mong Sano Marma; Qinglin Meng; Huanyan Cao; Xiaoxu Li; Shundi Shi; Lin Yu; Sergey Kalachikov; James J Russo; Nicholas J Turro; Jingyue Ju
Journal:  Proc Natl Acad Sci U S A       Date:  2008-06-30       Impact factor: 11.205

10.  Four-color DNA sequencing by synthesis using cleavable fluorescent nucleotide reversible terminators.

Authors:  Jingyue Ju; Dae Hyun Kim; Lanrong Bi; Qinglin Meng; Xiaopeng Bai; Zengmin Li; Xiaoxu Li; Mong Sano Marma; Shundi Shi; Jian Wu; John R Edwards; Aireen Romu; Nicholas J Turro
Journal:  Proc Natl Acad Sci U S A       Date:  2006-12-14       Impact factor: 11.205

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