Literature DB >> 9551554

The structure of the complex of plastocyanin and cytochrome f, determined by paramagnetic NMR and restrained rigid-body molecular dynamics.

M Ubbink1, M Ejdebäck, B G Karlsson, D S Bendall.   

Abstract

BACKGROUND: The reduction of plastocyanin by cytochrome f is part of the chain of photosynthetic electron transfer reactions that links photosystems II and I. The reaction is rapid and is influenced by charged residues on both proteins. Previously determined structures show that the plastocyanin copper and cytochrome f haem redox centres are some distance apart from the relevant charged sidechains, and until now it was unclear how a transient electrostatic complex can be formed that brings the redox centres sufficiently close for a rapid reaction.
RESULTS: A new approach was used to determine the structure of the transient complex between cytochrome f and plastocyanin. Diamagnetic chemical shift changes and intermolecular pseudocontact shifts in the NMR spectrum of plastocyanin were used as input in restrained rigid-body molecular dynamics calculations. An ensemble of ten structures was obtained, in which the root mean square deviation of the plastocyanin position relative to cytochrome f is 1.0 A. Electrostatic interaction is maintained at the same time as the hydrophobic side of plastocyanin makes close contact with the haem area, thus providing a short electron transfer pathway (Fe-Cu distance 10.9 A) via residues Tyr1 or Phe4 (cytochrome f) and the copper ligand His87 (plastocyanin).
CONCLUSIONS: The combined use of diamagnetic and paramagnetic chemical shift changes makes it possible to obtain detailed information about the structure of a transient complex of redox proteins. The structure suggests that the electrostatic interactions 'guide' the partners into a position that is optimal for electron transfer, and which may be stabilised by short-range interactions.

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Year:  1998        PMID: 9551554     DOI: 10.1016/s0969-2126(98)00035-5

Source DB:  PubMed          Journal:  Structure        ISSN: 0969-2126            Impact factor:   5.006


  54 in total

1.  The use of chemical shift temperature gradients to establish the paramagnetic susceptibility tensor orientation: implication for structure determination/refinement in paramagnetic metalloproteins.

Authors:  Z Xia; B D Nguyen; G N La Mar
Journal:  J Biomol NMR       Date:  2000-06       Impact factor: 2.835

2.  Surface interactions in the complex between cytochrome f and the E43Q/D44N and E59K/E60Q plastocyanin double mutants as determined by (1)H-NMR chemical shift analysis.

Authors:  A Bergkvist; M Ejdebäck; M Ubbink; B G Karlsson
Journal:  Protein Sci       Date:  2001-12       Impact factor: 6.725

3.  Electrostatic analysis and Brownian dynamics simulation of the association of plastocyanin and cytochrome f.

Authors:  F De Rienzo; R R Gabdoulline; M C Menziani; P G De Benedetti; R C Wade
Journal:  Biophys J       Date:  2001-12       Impact factor: 4.033

4.  Docking and electron transfer studies between rubredoxin and rubredoxin:oxygen oxidoreductase.

Authors:  Bruno L Victor; João B Vicente; Rute Rodrigues; Solange Oliveira; Claudina Rodrigues-Pousada; Carlos Frazão; Cláudio M Gomes; Miguel Teixeira; Cláudio M Soares
Journal:  J Biol Inorg Chem       Date:  2003-02-15       Impact factor: 3.358

5.  Theoretical descriptors for the quantitative rationalisation of plastocyanin mutant functional propertiess.

Authors:  F De Rienzo; G H Grant; M C Menziani
Journal:  J Comput Aided Mol Des       Date:  2002-07       Impact factor: 3.686

6.  Breaking symmetry in the structure determination of (large) symmetric protein dimers.

Authors:  Vadim Gaponenko; Amanda S Altieri; Jess Li; R Andrew Byrd
Journal:  J Biomol NMR       Date:  2002-10       Impact factor: 2.835

7.  The parsley plastocyanin-turnip cytochrome f complex: a structurally distorted but kinetically functional acidic patch.

Authors:  Peter B Crowley; David M Hunter; Katsuko Sato; William McFarlane; Christopher Dennison
Journal:  Biochem J       Date:  2004-02-15       Impact factor: 3.857

8.  A comparative structural and functional analysis of cyanobacterial plastocyanin and cytochrome c (6) as alternative electron donors to Photosystem I.

Authors:  Antonio Díaz-Quintana; José A Navarro; Manuel Hervás; Fernando P Molina-Heredia; Berta De la Cerda; Miguel A De la Rosa
Journal:  Photosynth Res       Date:  2003       Impact factor: 3.573

9.  Structural basis of efficient electron transport between photosynthetic membrane proteins and plastocyanin in spinach revealed using nuclear magnetic resonance.

Authors:  Takumi Ueda; Naoko Nomoto; Masamichi Koga; Hiroki Ogasa; Yuuta Ogawa; Masahiko Matsumoto; Pavlos Stampoulis; Koji Sode; Hiroaki Terasawa; Ichio Shimada
Journal:  Plant Cell       Date:  2012-10-02       Impact factor: 11.277

10.  Characterization and calculation of a cytochrome c-cytochrome b5 complex using NMR data.

Authors:  Shashank Deep; Sang-Choul Im; Erik R P Zuiderweg; Lucy Waskell
Journal:  Biochemistry       Date:  2005-08-09       Impact factor: 3.162

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