Literature DB >> 9541393

X-ray structures of three interface mutants of gammaB-crystallin from bovine eye lens.

S Palme1, R Jaenicke, C Slingsby.   

Abstract

GammaB-crystallin consists of two domains each comprising two "Greek key" motifs. Both domains fold independently, and domain interactions contribute significantly to the stability of the C-terminal domain. In a previous study (Palme S et al., 1996, Protein Sci 6:1529-1636) it was shown that Phe56 from the N-terminal domain, a residue involved in forming a hydrophobic core at the domain interface, effects the interaction of the two domains, and therefore, the stability of the C-terminal domain. Ala or Asp at position 56 drastically decreased the stability of the C-terminal domain, whereas Trp had a more moderate effect. In this article we present the X-ray structures of these interface mutants and correlate them with the stability data. The mutations do not effect the overall structure of the molecule. No structural changes are observed in the vicinity of the replaced residue, suggesting that the local structure is too rigid to allow compensations for the amino acid replacements. In the mutants gammaB-F56A and -F56D, a solvent-filled groove accessible to the bulk solvent is created by the replacement of the bulky Phe side chain. In gammaB-F56W, the pyrrole moiety of the indole ring replaces the phenyl side chain of the wild type. With the exception of gammaB-F56W, there is a good correlation between the hydrophobicity of the amino acid at position 56 according to the octanol scale and the stability of the C-terminal domain. In gammaB-F56W, the C-terminal domain is less stable than estimated from the hydrophobicity, presumably because the ring nitrogen (Nepsilon1) has no partner to form hydrogen bonds. The data suggest that the packing of hydrophobic residues in the interface core is important for domain interactions and the stability of gammaB-crystallin. Apparently, for protein stability, the same principles apply for hydrophobic cores within domains and at domain interfaces.

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Year:  1998        PMID: 9541393      PMCID: PMC2143951          DOI: 10.1002/pro.5560070310

Source DB:  PubMed          Journal:  Protein Sci        ISSN: 0961-8368            Impact factor:   6.725


  33 in total

1.  X-ray analysis of beta B2-crystallin and evolution of oligomeric lens proteins.

Authors:  B Bax; R Lapatto; V Nalini; H Driessen; P F Lindley; D Mahadevan; T L Blundell; C Slingsby
Journal:  Nature       Date:  1990-10-25       Impact factor: 49.962

Review 2.  The folding of an enzyme. II. Substructure of barnase and the contribution of different interactions to protein stability.

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Journal:  J Mol Biol       Date:  1992-04-05       Impact factor: 5.469

3.  Hydrophobicity regained.

Authors:  P A Karplus
Journal:  Protein Sci       Date:  1997-06       Impact factor: 6.725

Review 4.  Lens crystallins: the evolution and expression of proteins for a highly specialized tissue.

Authors:  G J Wistow; J Piatigorsky
Journal:  Annu Rev Biochem       Date:  1988       Impact factor: 23.643

5.  Folding of an all-beta protein: independent domain folding in gamma II-crystallin from calf eye lens.

Authors:  R Rudolph; R Siebendritt; G Nesslaŭer; A K Sharma; R Jaenicke
Journal:  Proc Natl Acad Sci U S A       Date:  1990-06       Impact factor: 11.205

6.  Temperature-sensitive mutations of bacteriophage T4 lysozyme occur at sites with low mobility and low solvent accessibility in the folded protein.

Authors:  T Alber; D P Sun; J A Nye; D C Muchmore; B W Matthews
Journal:  Biochemistry       Date:  1987-06-30       Impact factor: 3.162

7.  Solvent content of protein crystals.

Authors:  B W Matthews
Journal:  J Mol Biol       Date:  1968-04-28       Impact factor: 5.469

8.  Structural and energetic responses to cavity-creating mutations in hydrophobic cores: observation of a buried water molecule and the hydrophilic nature of such hydrophobic cavities.

Authors:  A M Buckle; P Cramer; A R Fersht
Journal:  Biochemistry       Date:  1996-04-09       Impact factor: 3.162

Review 9.  3D domain swapping: a mechanism for oligomer assembly.

Authors:  M J Bennett; M P Schlunegger; D Eisenberg
Journal:  Protein Sci       Date:  1995-12       Impact factor: 6.725

10.  Structure of bovine eye lens gammaD (gammaIIIb)-crystallin at 1.95 A.

Authors:  Y N Chirgadze; H P Driessen; G Wright; C Slingsby; R E Hay; P F Lindley
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  1996-07-01
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  6 in total

1.  Folding and stability of the isolated Greek key domains of the long-lived human lens proteins gammaD-crystallin and gammaS-crystallin.

Authors:  Ishara A Mills; Shannon L Flaugh; Melissa S Kosinski-Collins; Jonathan A King
Journal:  Protein Sci       Date:  2007-09-28       Impact factor: 6.725

2.  Contributions of hydrophobic domain interface interactions to the folding and stability of human gammaD-crystallin.

Authors:  Shannon L Flaugh; Melissa S Kosinski-Collins; Jonathan King
Journal:  Protein Sci       Date:  2005-03       Impact factor: 6.725

3.  Deamidation alters the structure and decreases the stability of human lens betaA3-crystallin.

Authors:  Takumi Takata; Julie T Oxford; Theodore R Brandon; Kirsten J Lampi
Journal:  Biochemistry       Date:  2007-07-07       Impact factor: 3.162

Review 4.  The βγ-crystallins: native state stability and pathways to aggregation.

Authors:  Eugene Serebryany; Jonathan A King
Journal:  Prog Biophys Mol Biol       Date:  2014-05-14       Impact factor: 3.667

5.  Mutation of interfaces in domain-swapped human betaB2-crystallin.

Authors:  Myron A Smith; Orval A Bateman; Rainer Jaenicke; Christine Slingsby
Journal:  Protein Sci       Date:  2007-02-27       Impact factor: 6.725

6.  Deamidation alters interactions of beta-crystallins in hetero-oligomers.

Authors:  Takumi Takata; Luke G Woodbury; Kirsten J Lampi
Journal:  Mol Vis       Date:  2009-01-28       Impact factor: 2.367

  6 in total

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