Literature DB >> 9519298

Pathways for protein folding: is a new view needed?

V S Pande1, T Tanaka, D S Rokhsar.   

Abstract

Theoretical studies using simplified models of proteins have shed light on the general heteropolymeric aspects of the folding problem. Recent work has emphasized the statistical aspects of folding pathways. In particular, progress has been made in characterizing the ensemble of transition state conformations and elucidating the role of intermediates. These advances suggest a reconciliation between the new ensemble approaches and the classical view of a folding pathway.

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Year:  1998        PMID: 9519298     DOI: 10.1016/s0959-440x(98)80012-2

Source DB:  PubMed          Journal:  Curr Opin Struct Biol        ISSN: 0959-440X            Impact factor:   6.809


  44 in total

Review 1.  Go-ing for the prediction of protein folding mechanisms.

Authors:  S Takada
Journal:  Proc Natl Acad Sci U S A       Date:  1999-10-12       Impact factor: 11.205

2.  An amino acid code for protein folding.

Authors:  J Rumbley; L Hoang; L Mayne; S W Englander
Journal:  Proc Natl Acad Sci U S A       Date:  2001-01-02       Impact factor: 11.205

3.  Molecular dynamics simulations of unfolding and refolding of a beta-hairpin fragment of protein G.

Authors:  V S Pande; D S Rokhsar
Journal:  Proc Natl Acad Sci U S A       Date:  1999-08-03       Impact factor: 11.205

4.  A simple model for calculating the kinetics of protein folding from three-dimensional structures.

Authors:  V Muñoz; W A Eaton
Journal:  Proc Natl Acad Sci U S A       Date:  1999-09-28       Impact factor: 11.205

5.  Prediction of protein-folding mechanisms from free-energy landscapes derived from native structures.

Authors:  E Alm; D Baker
Journal:  Proc Natl Acad Sci U S A       Date:  1999-09-28       Impact factor: 11.205

6.  Entropic barriers, transition states, funnels, and exponential protein folding kinetics: a simple model.

Authors:  D J Bicout; A Szabo
Journal:  Protein Sci       Date:  2000-03       Impact factor: 6.725

7.  Mechanisms and kinetics of beta-hairpin formation.

Authors:  D K Klimov; D Thirumalai
Journal:  Proc Natl Acad Sci U S A       Date:  2000-03-14       Impact factor: 11.205

8.  Long-range order in the src SH3 folding transition state.

Authors:  V P Grantcharova; D S Riddle; D Baker
Journal:  Proc Natl Acad Sci U S A       Date:  2000-06-20       Impact factor: 11.205

9.  Protein folding and unfolding on a complex energy landscape.

Authors:  D T Leeson; F Gai; H M Rodriguez; L M Gregoret; R B Dyer
Journal:  Proc Natl Acad Sci U S A       Date:  2000-03-14       Impact factor: 11.205

10.  Nonglassy kinetics in the folding of a simple single-domain protein.

Authors:  B Gillespie; K W Plaxco
Journal:  Proc Natl Acad Sci U S A       Date:  2000-10-24       Impact factor: 11.205

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